RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 NR4A3Q92570 626 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 SLC22A18Q96BI1 424 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 LMAN2LQ9H0V9 348 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 FOLH1BQ9HBA9 442 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 SPATA2Q9UM82 520 aa13.78□□□□□ -0.2
USP28-214ENST00000545540 I3L521 148 aa13.77□□□□□ -0.2
USP28-214ENST00000545540 ANXA3P12429 323 aa13.77□□□□□ -0.2
USP28-214ENST00000545540 RPS4Y1P22090 263 aaKnown RBP13.77□□□□□ -0.2
USP28-214ENST00000545540 CFL1P23528 166 aaKnown RBP13.77□□□□□ -0.2
USP28-214ENST00000545540 DNASE1P24855 282 aa13.77□□□□□ -0.2
USP28-214ENST00000545540 CDKN2AP42771 156 aaKnown RBP13.77□□□□□ -0.2
USP28-214ENST00000545540 RAD52P43351 418 aa13.77□□□□□ -0.2
USP28-214ENST00000545540 PRAMEF17Q5VTA0 474 aa13.77□□□□□ -0.2
USP28-214ENST00000545540 TIGD3Q6B0B8 471 aa13.77□□□□□ -0.2
USP28-214ENST00000545540 APOOLQ6UXV4 268 aa13.77□□□□□ -0.2
USP28-214ENST00000545540 CHMP1BQ7LBR1 199 aa13.77□□□□□ -0.2
USP28-214ENST00000545540 RLN3Q8WXF3 142 aa13.77□□□□□ -0.2
USP28-214ENST00000545540 SMIM19Q96E16 107 aa13.77□□□□□ -0.2
USP28-214ENST00000545540 UBL7Q96S82 380 aaPredicted RBP13.77□□□□□ -0.2
USP28-214ENST00000545540 IKZF2Q9UKS7 526 aa13.77□□□□□ -0.2
USP28-214ENST00000545540 SPACA6W5XKT8 324 aa13.77□□□□□ -0.2
USP28-214ENST00000545540 KHDRBS3O75525 346 aaKnown RBP13.77□□□□□ -0.21
USP28-214ENST00000545540 SC5DO75845 299 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 RGS11O94810 467 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 MPC2O95563 127 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 IFNGP01579 166 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 PROS1P07225 676 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 KIR2DS3Q14952 304 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 LRRC69Q6ZNQ3 347 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 FAM109AQ8N4B1 249 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 FAM160A2Q8N612 972 aaPredicted RBP13.77□□□□□ -0.21
USP28-214ENST00000545540 DDOQ99489 341 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 NARFLQ9H6Q4 476 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 NTMQ9P121 344 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 KHNYNO15037 678 aaKnown RBP13.77□□□□□ -0.21
USP28-214ENST00000545540 PLGP00747 810 aaPredicted RBP13.77□□□□□ -0.21
USP28-214ENST00000545540 SPI1P17947 270 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 PER3P56645 1201 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 SQSTM1Q13501 440 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 RIN1Q13671 783 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 SMUG1Q53HV7 270 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 TEX261Q6UWH6 196 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 CHRNA9Q9UGM1 479 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 SLC6A5Q9Y345 797 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 U3KQ87 197 aa13.77□□□□□ -0.21
USP28-214ENST00000545540 FMO6PO60774 539 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 NDUFB2O95178 105 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 ILF3Q12906 894 aaKnown RBP eCLIP13.76□□□□□ -0.21
USP28-214ENST00000545540 ZBTB37Q5TC79 503 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 CREB3L2Q70SY1 520 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 LUZP2Q86TE4 346 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 SLC22A18ASQ8N1D0 253 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 RPLP0P6Q8NHW5 317 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 C1orf216Q8TAB5 229 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 RGP1Q92546 391 aaPredicted RBP13.76□□□□□ -0.21
USP28-214ENST00000545540 EML5Q05BV3 1969 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 APBB3O95704 486 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 TPMTP51580 245 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 NHLRC1Q6VVB1 395 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 FTMTQ8N4E7 242 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 NPEPL1Q8NDH3 523 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 BAHD1Q8TBE0 780 aaPredicted RBP13.76□□□□□ -0.21
USP28-214ENST00000545540 SUN5Q8TC36 379 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 C20orf85Q9H1P6 137 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 CA10Q9NS85 328 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 C11orf98E9PRG8 122 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 UBL3O95164 117 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 BDH1Q02338 343 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 TOR2AQ5JU69 321 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 C1QL3Q5VWW1 255 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 FAM198BQ6UWH4 519 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 PRR23CQ6ZRP0 262 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 ATOH1Q92858 354 aaPredicted RBP13.76□□□□□ -0.21
USP28-214ENST00000545540 SGTBQ96EQ0 304 aa13.76□□□□□ -0.21
USP28-214ENST00000545540 S1PR1P21453 382 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 ZNF10P21506 573 aaPredicted RBP13.75□□□□□ -0.21
USP28-214ENST00000545540 MAZP56270 477 aaKnown RBP13.75□□□□□ -0.21
USP28-214ENST00000545540 CD226Q15762 336 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 MS4A15Q8N5U1 240 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 OR11G2Q8NGC1 345 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 C16orf52Q8NHV5 167 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 SYNPRQ8TBG9 265 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 PHOSPHO1Q8TCT1 267 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 OMA1Q96E52 524 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 MSANTD3Q96H12 275 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 ZNF69Q9UC07 566 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 TMEM184BQ9Y519 407 aaPredicted RBP13.75□□□□□ -0.21
USP28-214ENST00000545540 PCNX3Q9H6A9 2034 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 A6NCN8 305 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 SLC22A5O76082 557 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 ALDOBP05062 364 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 CAMK2DQ13557 499 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 ENPP2Q13822 863 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 ZNHIT3Q15649 155 aaPredicted RBP13.75□□□□□ -0.21
USP28-214ENST00000545540 ARHGAP11AQ6P4F7 1023 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 ZNF613Q6PF04 617 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 SLC35D2Q76EJ3 337 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 RTL10Q7L3V2 364 aa13.75□□□□□ -0.21
USP28-214ENST00000545540 SAMD14Q8IZD0 417 aaPredicted RBP13.75□□□□□ -0.21
USP28-214ENST00000545540 SLC25A38Q96DW6 304 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms