RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 B3GAT1Q9P2W7 334 aa12.51□□□□□ -0.41
USP28-209ENST00000540925 OR5H1A6NKK0 313 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 M0R3H8 397 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 AHSA1O95433 338 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 PLAUP00749 431 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 RPS5P46782 204 aaKnown RBP12.5□□□□□ -0.41
USP28-209ENST00000540925 KEAP1Q14145 624 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 ACKR1Q16570 336 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 NCMAPQ5T1S8 102 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 FAM69AQ5T7M9 428 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 INTS11Q5TA45 600 aaKnown RBP12.5□□□□□ -0.41
USP28-209ENST00000540925 TSPO2Q5TGU0 170 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 ADAM5Q6NVV9 412 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 ZNF613Q6PF04 617 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 CASP12Q6UXS9 341 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 NHLRC1Q6VVB1 395 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 CREB3L2Q70SY1 520 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 WFDC8Q8IUA0 241 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 RBM45Q8IUH3 476 aaKnown RBP12.5□□□□□ -0.41
USP28-209ENST00000540925 PCYOX1LQ8NBM8 494 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 LILRB1Q8NHL6 650 aaPredicted RBP12.5□□□□□ -0.41
USP28-209ENST00000540925 RP9Q8TA86 221 aaKnown RBP12.5□□□□□ -0.41
USP28-209ENST00000540925 SLC47A1Q96FL8 570 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 SLC41A3Q96GZ6 507 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 MUS81Q96NY9 551 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 PIP5K1AQ99755 562 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 MYLK2Q9H1R3 596 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 SLC7A10Q9NS82 523 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 ASB6Q9NWX5 421 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 TAS2R16Q9NYV7 291 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 NPAP1Q9NZP6 1156 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 RPS6KB2Q9UBS0 482 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 SEC14L4Q9UDX3 406 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 USP22Q9UPT9 525 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 RASD1Q9Y272 281 aa12.5□□□□□ -0.41
USP28-209ENST00000540925 NIPBLQ6KC79 2804 aaeCLIP12.5□□□□□ -0.41
USP28-209ENST00000540925 TRAV36DV7A0A075B6V5 113 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 LOC102725191A0A1B0GVB3 256 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 OR2T1O43869 369 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 ZNF432O94892 652 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 BGLAPP02818 100 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 GGT1P19440 569 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 LTBQ06643 244 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 GABRA6Q16445 453 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 KRTAP21-3Q3LHN1 58 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 MMEL1Q495T6 779 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 WDR88Q6ZMY6 472 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 ZNF704Q6ZNC4 412 aaPredicted RBP12.49□□□□□ -0.41
USP28-209ENST00000540925 C20orf204Q6ZNR8 217 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 SSX8Q7RTT4 187 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 RANBP3LQ86VV4 465 aaPredicted RBP12.49□□□□□ -0.41
USP28-209ENST00000540925 TREML1Q86YW5 311 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 POU5F2Q8N7G0 328 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 ADPRHL1Q8NDY3 354 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 RCN3Q96D15 328 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 MCHR1Q99705 422 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 ECSITQ9BQ95 431 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 TMEM43Q9BTV4 400 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 ZNF426Q9BUY5 554 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 TMEM27Q9HBJ8 222 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 BEX4Q9NWD9 120 aaPredicted RBP12.49□□□□□ -0.41
USP28-209ENST00000540925 GID8Q9NWU2 228 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 CMTM6Q9NX76 183 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 CADP27708 2225 aa12.49□□□□□ -0.41
USP28-209ENST00000540925 DPRXA6NFQ7 191 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 FAM220BPB1ANY3 271 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 M0R082 166 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 CHP2O43745 196 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 CCDC22O60826 627 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 COX4I1P13073 169 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 DRD4P21917 467 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 HOXC12P31275 282 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 SEC24CP53992 1094 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 NCALDP61601 193 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 FAPQ12884 760 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 PPA1Q15181 289 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 TMEM225Q6GV28 225 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 ERICH5Q6P6B1 374 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 AAED1Q7RTV5 226 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 SPATA21Q7Z572 469 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 GPAT4Q86UL3 456 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 P3H2Q8IVL5 708 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 UBE2J2Q8N2K1 259 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 WDR31Q8NA23 367 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 C1orf162Q8NEQ5 155 aaPredicted RBP12.48□□□□□ -0.41
USP28-209ENST00000540925 ZNF417Q8TAU3 575 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 RASSF5Q8WWW0 418 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 ZNF587Q96SQ5 575 aaPredicted RBP12.48□□□□□ -0.41
USP28-209ENST00000540925 TMUB1Q9BVT8 246 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 SLC13A4Q9UKG4 626 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 B3GALT5Q9Y2C3 310 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 SLC25A15Q9Y619 301 aa12.48□□□□□ -0.41
USP28-209ENST00000540925 FLNAP21333 2647 aaKnown RBP12.47□□□□□ -0.41
USP28-209ENST00000540925 CCT8L1PA6NM43 557 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 MS4A18H0YCH9 400 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 AIM2O14862 343 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 TRAF3IP2O43734 574 aaPredicted RBP12.47□□□□□ -0.41
USP28-209ENST00000540925 RAD51DO75771 328 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 MPGP29372 298 aa12.47□□□□□ -0.41
USP28-209ENST00000540925 GRPRP30550 384 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms