RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 COQ7Q99807 217 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 FBRSQ9HAH7 460 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 MKL2Q9ULH7 1088 aa15.44■□□□□ 0.06
USP28-208ENST00000540438 ARHGEF9O43307 516 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 PRAMEF2O60811 474 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 PRKAR1AP10644 381 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 FOLR1P15328 257 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 RAB3BP20337 219 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 TACR3P29371 465 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 THBS2P35442 1172 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 TALDO1P37837 337 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 FGFBP1Q14512 234 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 ETFDHQ16134 617 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 ARHGEF39Q8N4T4 335 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 LSM14AQ8ND56 463 aaKnown RBP15.43■□□□□ 0.06
USP28-208ENST00000540438 NPEPL1Q8NDH3 523 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 ASB12Q8WXK4 309 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 CTRCQ99895 268 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 SYT4Q9H2B2 425 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 C8orf33Q9H7E9 229 aaPredicted RBP15.43■□□□□ 0.06
USP28-208ENST00000540438 PDE7BQ9NP56 450 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 TRPV5Q9NQA5 729 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 POU3F3P20264 500 aaPredicted RBP15.43■□□□□ 0.06
USP28-208ENST00000540438 RPS15P62841 145 aaKnown RBP15.43■□□□□ 0.06
USP28-208ENST00000540438 CHRDL2Q6WN34 429 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 THEM6Q8WUY1 208 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 CNN2Q99439 309 aaKnown RBP15.43■□□□□ 0.06
USP28-208ENST00000540438 MED18Q9BUE0 208 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 DUSP15Q9H1R2 295 aaPredicted RBP15.43■□□□□ 0.06
USP28-208ENST00000540438 LOC400499M0QZD8 3231 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 KIF26BQ2KJY2 2108 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 MEIS3P1A6NDR6 274 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 H0YC42 278 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 H0YIG0 161 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 IFNGP01579 166 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 CFHR1Q03591 330 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 MEP1BQ16820 701 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 ZSWIM7Q19AV6 140 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 MZT2AQ6P582 158 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 DPY19L4Q7Z388 723 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 MDGA2Q7Z553 956 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 ZNF615Q8N8J6 731 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 SCAIQ8N9R8 606 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 FAM210AQ96ND0 272 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 SEMA4CQ9C0C4 833 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 NCDNQ9UBB6 729 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 CTSFQ9UBX1 484 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 FLVCR2Q9UPI3 526 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 RNF215Q9Y6U7 377 aa15.43■□□□□ 0.06
USP28-208ENST00000540438 A0A0G2JK05 382 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 UTS2O95399 124 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 MAS1P04201 325 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 DCNP07585 359 aaKnown RBP15.42■□□□□ 0.06
USP28-208ENST00000540438 GIFP27352 417 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 SIRPAP78324 504 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 EGR4Q05215 589 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 DMRTC1Q5HYR2 192 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 OR6N2Q8NGY6 317 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 LGALS14Q8TCE9 139 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 AMELYQ99218 206 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 DPYSL5Q9BPU6 564 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 TTYH1Q9H313 450 aaPredicted RBP15.42■□□□□ 0.06
USP28-208ENST00000540438 OR5K4A6NMS3 321 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 INMT-MINDY4F8WBC2 141 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 TOXO94900 526 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 ANKRD34CP0C6C1 535 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 BLKP51451 505 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 BICRALQ6AI39 1079 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 HBMQ6B0K9 141 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 NR4A3Q92570 626 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 ALG12Q9BV10 488 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 NUDT9Q9BW91 350 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 CUTCQ9NTM9 273 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 RBFOX1Q9NWB1 397 aaKnown RBP15.42■□□□□ 0.06
USP28-208ENST00000540438 ST6GALNAC2Q9UJ37 374 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 TMEM5Q9Y2B1 443 aa15.42■□□□□ 0.06
USP28-208ENST00000540438 KNTC1P50748 2209 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 A0A087WUJ7 227 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 ZFPL1O95159 310 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 MAGEA8P43361 318 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 CEP78Q5JTW2 689 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 FAM205BPQ63HN1 556 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 NUDT22Q9BRQ3 303 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 FER1L5A0AVI2 2057 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 FAM221BA6H8Z2 402 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 SCDO00767 359 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 PIN1P1O15428 100 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 TMIGD3P0DMS9 266 aaPredicted RBP15.41■□□□□ 0.06
USP28-208ENST00000540438 IL11P20809 199 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 GRK6P43250 576 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 DMWDQ09019 674 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 MELKQ14680 651 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 ELOCQ15369 112 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 ARHGAP11AQ6P4F7 1023 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 PM20D2Q8IYS1 436 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 ZSCAN1Q8NBB4 408 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 OR1L3Q8NH93 324 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 SETD6Q8TBK2 473 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 TAAR8Q969N4 342 aa15.41■□□□□ 0.06
USP28-208ENST00000540438 ADAD1Q96M93 576 aaKnown RBP15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms