RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ZNF442Q9H7R0 627 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 RAP2CQ9Y3L5 183 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 DSPPQ9NZW4 1301 aa11.79□□□□□ -0.52
SS18-204ENST00000539244 A0A096LPI6 279 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 A8MVM7 634 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 BIRC5O15392 142 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 FRS3O43559 492 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 FZD7O75084 574 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 KRT33AO76009 404 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 STAMBPO95630 424 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 CECR9P0C854 216 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 CALCRP30988 508 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 SELENOPP49908 381 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 RPL14P50914 215 aaKnown RBP11.78□□□□□ -0.52
SS18-204ENST00000539244 SH3BGRP55822 239 aaPredicted RBP11.78□□□□□ -0.52
SS18-204ENST00000539244 UBE2NP61088 152 aaKnown RBP11.78□□□□□ -0.52
SS18-204ENST00000539244 LGALS3BPQ08380 585 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 LRRC74AQ0VAA2 488 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 CHI3L2Q15782 390 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 CARTPTQ16568 116 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 WBP2NLQ6ICG8 309 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 SPATA19Q7Z5L4 167 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 EPHX4Q8IUS5 362 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 PEX5LQ8IYB4 626 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 NEU4Q8WWR8 484 aaPredicted RBP11.78□□□□□ -0.52
SS18-204ENST00000539244 PKNOX2Q96KN3 472 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 TEX37Q96LM6 180 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 PANX1Q96RD7 426 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 SORT1Q99523 831 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 TAPBPLQ9BX59 468 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 RLIMQ9NVW2 624 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 RASD1Q9Y272 281 aa11.78□□□□□ -0.52
SS18-204ENST00000539244 RPL36A-HNRNPH2H7BZ11 118 aa11.77□□□□□ -0.53
SS18-204ENST00000539244 LILRA1O75019 489 aa11.77□□□□□ -0.53
SS18-204ENST00000539244 UPK3AO75631 287 aa11.77□□□□□ -0.53
SS18-204ENST00000539244 ALDOCP09972 364 aaKnown RBP11.77□□□□□ -0.53
SS18-204ENST00000539244 GKN3PP0CG01 181 aa11.77□□□□□ -0.53
SS18-204ENST00000539244 NR2F1P10589 423 aa11.77□□□□□ -0.53
SS18-204ENST00000539244 CDKN2CP42773 168 aa11.77□□□□□ -0.53
SS18-204ENST00000539244 IFFO1Q0D2I5 559 aa11.77□□□□□ -0.53
SS18-204ENST00000539244 LIN52Q52LA3 116 aa11.77□□□□□ -0.53
SS18-204ENST00000539244 COX20Q5RI15 118 aa11.77□□□□□ -0.53
SS18-204ENST00000539244 RNF220Q5VTB9 566 aa11.77□□□□□ -0.53
SS18-204ENST00000539244 C1orf140Q5VVS0 124 aa11.77□□□□□ -0.53
SS18-204ENST00000539244 ZNF836Q6ZNA1 936 aa11.77□□□□□ -0.53
SS18-204ENST00000539244 C1orf159Q96HA4 380 aa11.77□□□□□ -0.53
SS18-204ENST00000539244 DOK1Q99704 481 aa11.77□□□□□ -0.53
SS18-204ENST00000539244 MEAF6Q9HAF1 191 aa11.77□□□□□ -0.53
SS18-204ENST00000539244 ADPRHL2Q9NX46 363 aa11.77□□□□□ -0.53
SS18-204ENST00000539244 RCE1Q9Y256 329 aa11.77□□□□□ -0.53
SS18-204ENST00000539244 LRP5LA4QPB2 252 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 TMEM229AB2RXF0 380 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 FTCDNL1E5RQL4 147 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 NR5A2O00482 541 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 ZNF432O94892 652 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 TFPTP0C1Z6 253 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 DAOP14920 347 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 CBR1P16152 277 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 IL12AP29459 219 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 SLC1A6P48664 564 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 CHN2P52757 468 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 MVDP53602 400 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 COPZ1P61923 177 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 UFM1P61960 85 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 POU3F1Q03052 451 aaPredicted RBP11.76□□□□□ -0.53
SS18-204ENST00000539244 HGFACQ04756 655 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 BNIP2Q12982 314 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 PRAMEF8Q5VWM4 474 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 PRAMEF7Q5VXH5 474 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 NIPAL3Q6P499 406 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 VHLLQ6RSH7 139 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 VRK2Q86Y07 508 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 ZNF786Q8N393 782 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 OR52P1PQ8NH57 321 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 MFSD8Q8NHS3 518 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 STK35Q8TDR2 534 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 TMEM109Q9BVC6 243 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 NUF2Q9BZD4 464 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 SEC61A2Q9H9S3 476 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 AIG1Q9NVV5 245 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 CALML5Q9NZT1 146 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 P2RX2Q9UBL9 471 aa11.76□□□□□ -0.53
SS18-204ENST00000539244 A0A096LPE4 126 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 A0A1W2PPZ6 126 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 TMEM129A0AVI4 362 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 WDR91A4D1P6 747 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 VSTM5A8MXK1 200 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 hCG_2039718K7EN88 272 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 TCF21O43680 179 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 KRT75O95678 551 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 ERCC1P07992 297 aaPredicted RBP11.75□□□□□ -0.53
SS18-204ENST00000539244 IGFBP1P08833 259 aaPredicted RBP11.75□□□□□ -0.53
SS18-204ENST00000539244 NPR2P20594 1047 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 IL2RGP31785 369 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 THBS4P35443 961 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 TUBA1BP68363 451 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 TUBA4AP68366 448 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 ROR2Q01974 943 aaKnown RBP11.75□□□□□ -0.53
SS18-204ENST00000539244 RIN1Q13671 783 aa11.75□□□□□ -0.53
SS18-204ENST00000539244 UGT2A3Q6UWM9 527 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms