RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 PRG2P13727 222 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 RHCEP18577 417 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 THBS2P35442 1172 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 IDH2P48735 452 aaKnown RBP11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 GAS1P54826 345 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 SMIM11AP58511 58 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 GANABQ14697 944 aaKnown RBP11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 ENTPD8Q5MY95 495 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 ZNF474Q6S9Z5 364 aaPredicted RBP11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 CBLN3Q6UW01 205 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 COMTD1Q86VU5 262 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 RBM45Q8IUH3 476 aaKnown RBP11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 GCNT2Q8N0V5 402 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 FAM71CQ8NEG0 241 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 OR4D11Q8NGI4 311 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 RNF138Q8WVD3 245 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 WNT2BQ93097 391 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 STARD4Q96DR4 205 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 DUS3LQ96G46 650 aaKnown RBP11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 PRRC1Q96M27 445 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 ZNF300Q96RE9 604 aaPredicted RBP11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 POLR2J2Q9GZM3 115 aaKnown RBP11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 POLR2J3Q9H1A7 115 aaKnown RBP11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 CXorf56Q9H5V9 222 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 REEP1Q9H902 201 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 ARMC1Q9NVT9 282 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 TAS2R10Q9NYW0 307 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 CLCF1Q9UBD9 225 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 VDAC3Q9Y277 283 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 C15orf41Q9Y2V0 281 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 CHST2Q9Y4C5 530 aa11.14□□□□□ -0.63
CLSTN3-208ENST00000538933 ALPK2Q86TB3 2170 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 TRAPPC13A5PLN9 417 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 TMEM229AB2RXF0 380 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 OVOL3O00110 214 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 KCNAB3O43448 404 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 KLF4O43474 513 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 FMO6PO60774 539 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 CBR3O75828 277 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 DIRAS1O95057 198 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 TCEA1P23193 301 aaKnown RBP11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 RRM2P31350 389 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 UGT2B10P36537 528 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 CD79BP40259 229 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 ARHGDIAP52565 204 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 CDH12P55289 794 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 SRSF2Q01130 221 aaKnown RBP11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 ST3GAL3Q11203 375 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 QPRTQ15274 297 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 RCN1Q15293 331 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 OR1Q1Q15612 314 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 FGD3Q5JSP0 725 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 TIGD3Q6B0B8 471 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 WBP2NLQ6ICG8 309 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 OR2T5Q6IEZ7 315 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 RRM2BQ7LG56 351 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 PIWIL3Q7Z3Z3 882 aaKnown RBP11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 PAPD5Q8NDF8 572 aaKnown RBP11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 OR2M3Q8NG83 312 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 OR2T29Q8NH02 315 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 SLCO4A1Q96BD0 722 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 MED18Q9BUE0 208 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 DCLRE1BQ9H816 532 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 NDUFAF4Q9P032 175 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 RHCGQ9UBD6 479 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 ICAM5Q9UMF0 924 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 DYSFO75923 2080 aa11.13□□□□□ -0.63
CLSTN3-208ENST00000538933 IGLV3-32A0A0A0MS00 114 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 A0A1W2PNV4 684 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 ELOA3DA6NLF2 546 aaPredicted RBP11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 C17orf51A8MQB3 221 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 J3KTA2 159 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 CLOCKO15516 846 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 TPST2O60704 377 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 OR5F1O95221 314 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 GADD45GO95257 159 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 ACTL6AO96019 429 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 PLAUP00749 431 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 THBDP07204 575 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 H1F0P07305 194 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 HK1P19367 917 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 DPP4P27487 766 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 GCKP35557 465 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 ACAA2P42765 397 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 MAGEA2P43356 314 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 HTR3AP46098 478 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 DSCR4P56555 118 aaPredicted RBP11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 SESN3P58005 492 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 PIN1Q13526 163 aaPredicted RBP11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 TRAM2Q15035 370 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 NPTX1Q15818 432 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 ELOA3BQ3SY89 546 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 ALG10BQ5I7T1 473 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 EEF1A1P5Q5VTE0 462 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 ZNF613Q6PF04 617 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 ZNF611Q8N823 705 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 WDSUB1Q8N9V3 476 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 ICA1LQ8NDH6 482 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 PIK3C3Q8NEB9 887 aa11.12□□□□□ -0.63
CLSTN3-208ENST00000538933 ELOA3Q8NG57 546 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms