RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 THBS2P35442 1172 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 LTBRP36941 435 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 NPBWR1P48145 328 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 MTNR1BP49286 362 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 PPT1P50897 306 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 PITPNAQ00169 270 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 FABP9Q0Z7S8 132 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 KLF9Q13886 244 aaPredicted RBP12.87□□□□□ -0.35
LIG1-203ENST00000536218 ZNF630Q2M218 657 aaPredicted RBP12.87□□□□□ -0.35
LIG1-203ENST00000536218 EOGTQ5NDL2 527 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 ASPGQ86U10 573 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 CCDC116Q8IYX3 515 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 OR10G6Q8NH81 332 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 TMEM19Q96HH6 336 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 ZC3H10Q96K80 434 aaKnown RBP12.87□□□□□ -0.35
LIG1-203ENST00000536218 KCNK12Q9HB15 430 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 GPN1Q9HCN4 374 aaPredicted RBP12.87□□□□□ -0.35
LIG1-203ENST00000536218 HRASLSQ9HDD0 168 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 ISYNA1Q9NPH2 558 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 UFSP2Q9NUQ7 469 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 AKAP7Q9P0M2 348 aaPredicted RBP12.87□□□□□ -0.35
LIG1-203ENST00000536218 A0A1B0GUH1 482 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 ASGR2P07307 311 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 ARAFP10398 606 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 IFNGR1P15260 489 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 NDUFV2P19404 249 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 CCR9P51686 369 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 SLC3A1Q07837 685 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 DMRTC2Q8IXT2 367 aaPredicted RBP12.87□□□□□ -0.35
LIG1-203ENST00000536218 MNTQ99583 582 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 TMEM185BQ9H7F4 350 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 FGF20Q9NP95 211 aaPredicted RBP12.87□□□□□ -0.35
LIG1-203ENST00000536218 TMEM138Q9NPI0 162 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 NDOR1Q9UHB4 597 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 ATG4BQ9Y4P1 393 aa12.87□□□□□ -0.35
LIG1-203ENST00000536218 OR2M5A3KFT3 312 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 GOSR2O14653 212 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 IGFBP4P22692 258 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 CERS1P27544 350 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 MMP15P51511 669 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 NCBP2P52298 156 aaKnown RBP eCLIP12.86□□□□□ -0.35
LIG1-203ENST00000536218 EEF1A2Q05639 463 aaKnown RBP12.86□□□□□ -0.35
LIG1-203ENST00000536218 ZNF155Q12901 538 aaPredicted RBP12.86□□□□□ -0.35
LIG1-203ENST00000536218 SLC9A5Q14940 896 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 BEX5Q5H9J7 111 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 REEP3Q6NUK4 255 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 SSX9Q7RTT3 188 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 CEACAM19Q7Z692 300 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 IQCHQ86VS3 1027 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 SFTPA2Q8IWL1 248 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 PATE1Q8WXA2 126 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 BMFQ96LC9 184 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 TMPRSS13Q9BYE2 586 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 PLA2G12AQ9BZM1 189 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 TMEM38AQ9H6F2 299 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 TMEM231Q9H6L2 316 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 ZCCHC3Q9NUD5 404 aaKnown RBP12.86□□□□□ -0.35
LIG1-203ENST00000536218 TICRRQ7Z2Z1 1910 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 TCRBV21S2A2A0A5A6 115 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 TMEM82A0PJX8 343 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 ANHXE9PGG2 379 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 FAAHO00519 579 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 GPR37O15354 613 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 RNF13O43567 381 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 CLEC3AO75596 197 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 GCGRP47871 477 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 MAT1AQ00266 395 aaKnown RBP12.86□□□□□ -0.35
LIG1-203ENST00000536218 SYPL1Q16563 259 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 C2orf68Q2NKX9 166 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 RAB12Q6IQ22 244 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 HEPHL1Q6MZM0 1159 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 GLDNQ6ZMI3 551 aaPredicted RBP12.86□□□□□ -0.35
LIG1-203ENST00000536218 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.86□□□□□ -0.35
LIG1-203ENST00000536218 SPICQ8N5J4 248 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 ZNF614Q8N883 585 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 ACOT4Q8N9L9 421 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 ZNF671Q8TAW3 534 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 CPNE2Q96FN4 548 aaPredicted RBP12.86□□□□□ -0.35
LIG1-203ENST00000536218 ZDHHC12Q96GR4 267 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 GLIPR2Q9H4G4 154 aa12.86□□□□□ -0.35
LIG1-203ENST00000536218 ARHGEF17Q96PE2 2063 aaPredicted RBP12.86□□□□□ -0.35
LIG1-203ENST00000536218 ARRDC5A6NEK1 342 aa12.85□□□□□ -0.35
LIG1-203ENST00000536218 RLN1P04808 185 aa12.85□□□□□ -0.35
LIG1-203ENST00000536218 FBP1P09467 338 aa12.85□□□□□ -0.35
LIG1-203ENST00000536218 GPR143P51810 404 aa12.85□□□□□ -0.35
LIG1-203ENST00000536218 LUMP51884 338 aaPredicted RBP12.85□□□□□ -0.35
LIG1-203ENST00000536218 H2BFSP57053 126 aa12.85□□□□□ -0.35
LIG1-203ENST00000536218 HABP2Q14520 560 aaPredicted RBP12.85□□□□□ -0.35
LIG1-203ENST00000536218 CYB5R2Q6BCY4 276 aa12.85□□□□□ -0.35
LIG1-203ENST00000536218 OR7E24Q6IFN5 339 aa12.85□□□□□ -0.35
LIG1-203ENST00000536218 TCTN3Q6NUS6 607 aa12.85□□□□□ -0.35
LIG1-203ENST00000536218 SEZ6L2Q6UXD5 910 aa12.85□□□□□ -0.35
LIG1-203ENST00000536218 OR1S2Q8NGQ3 325 aa12.85□□□□□ -0.35
LIG1-203ENST00000536218 STK35Q8TDR2 534 aa12.85□□□□□ -0.35
LIG1-203ENST00000536218 DOK4Q8TEW6 326 aa12.85□□□□□ -0.35
LIG1-203ENST00000536218 CHMP1AQ9HD42 196 aaPredicted RBP12.85□□□□□ -0.35
LIG1-203ENST00000536218 SIRT3Q9NTG7 399 aaPredicted RBP12.85□□□□□ -0.35
LIG1-203ENST00000536218 OPN4Q9UHM6 478 aa12.85□□□□□ -0.35
LIG1-203ENST00000536218 CD207Q9UJ71 328 aa12.85□□□□□ -0.35
LIG1-203ENST00000536218 PCDHB10Q9UN67 800 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms