RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 RPL36Q9Y3U8 105 aaKnown RBP18.96■□□□□ 0.63
VPS28-208ENST00000527797 SNX5Q9Y5X3 404 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 KCNMB2Q9Y691 235 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 PCNX3Q9H6A9 2034 aa18.96■□□□□ 0.63
VPS28-208ENST00000527797 DOCK10Q96BY6 2186 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 KLRC4-KLRK1H3BQV0 150 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 ARPC3O15145 178 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 IDH3BO43837 385 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 NME2P1O60361 137 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 MRPS14O60783 128 aaKnown RBP18.95■□□□□ 0.62
VPS28-208ENST00000527797 OR6A2O95222 327 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 IFNGP01579 166 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 TFAP2AP05549 437 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 RFPL3SP0C7P2 107 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 NME2P22392 152 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 PIGFQ07326 219 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 OR7A5Q15622 319 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 OR14L1PQ8NHC6 308 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 RHNO1Q9BSD3 238 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 COPS4Q9BT78 406 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 KATNB1Q9BVA0 655 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 CCDC90BQ9GZT6 254 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 TMEM185BQ9H7F4 350 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 MRPL39Q9NYK5 338 aaKnown RBP18.95■□□□□ 0.62
VPS28-208ENST00000527797 H2AFY2Q9P0M6 372 aaPredicted RBP18.95■□□□□ 0.62
VPS28-208ENST00000527797 B4GALT7Q9UBV7 327 aa18.95■□□□□ 0.62
VPS28-208ENST00000527797 OR2M5A3KFT3 312 aa18.94■□□□□ 0.62
VPS28-208ENST00000527797 EFCAB10A6NFE3 127 aa18.94■□□□□ 0.62
VPS28-208ENST00000527797 KDM4EB2RXH2 506 aaPredicted RBP18.94■□□□□ 0.62
VPS28-208ENST00000527797 RGS10O43665 173 aa18.94■□□□□ 0.62
VPS28-208ENST00000527797 CD14P08571 375 aa18.94■□□□□ 0.62
VPS28-208ENST00000527797 IMPDH2P12268 514 aa18.94■□□□□ 0.62
VPS28-208ENST00000527797 GDF1P27539 372 aa18.94■□□□□ 0.62
VPS28-208ENST00000527797 CTXN1P60606 82 aa18.94■□□□□ 0.62
VPS28-208ENST00000527797 ERVK-25P63136 954 aa18.94■□□□□ 0.62
VPS28-208ENST00000527797 TMEM176BQ3YBM2 270 aaPredicted RBP18.94■□□□□ 0.62
VPS28-208ENST00000527797 CFAP54Q96N23 3096 aa18.94■□□□□ 0.62
VPS28-208ENST00000527797 FKBP14Q9NWM8 211 aa18.94■□□□□ 0.62
VPS28-208ENST00000527797 TAS2R5Q9NYW4 299 aa18.94■□□□□ 0.62
VPS28-208ENST00000527797 CNOT2Q9NZN8 540 aaKnown RBP18.94■□□□□ 0.62
VPS28-208ENST00000527797 KLHL21Q9UJP4 597 aa18.94■□□□□ 0.62
VPS28-208ENST00000527797 LIPT2A6NK58 231 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 M0R082 166 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 PRODHO43272 600 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 TRAPPC6AO75865 159 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 OPN1LWP04000 364 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 F13BP05160 661 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 HTR1AP08908 422 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 ADORA3P0DMS8 318 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 APEHP13798 732 aaKnown RBP18.93■□□□□ 0.62
VPS28-208ENST00000527797 ZNF3P17036 446 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 MYBPHQ13203 477 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 AADACL4Q5VUY2 407 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 NXNL2Q5VZ03 156 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 CXXC5Q7LFL8 322 aaKnown RBP18.93■□□□□ 0.62
VPS28-208ENST00000527797 GALNTL5Q7Z4T8 443 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 YRDCQ86U90 279 aaKnown RBP18.93■□□□□ 0.62
VPS28-208ENST00000527797 CPOQ8IVL8 374 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 SPARTQ8N0X7 666 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 SCAIQ8N9R8 606 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 ZNF417Q8TAU3 575 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 RFKQ969G6 155 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 OR5B2Q96R09 309 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 ZNF587Q96SQ5 575 aaPredicted RBP18.93■□□□□ 0.62
VPS28-208ENST00000527797 OR2B2Q9GZK3 357 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 HINT3Q9NQE9 182 aaKnown RBP18.93■□□□□ 0.62
VPS28-208ENST00000527797 ALKBH4Q9NXW9 302 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 SEC14L4Q9UDX3 406 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 HDGFL3Q9Y3E1 203 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 ADAM18Q9Y3Q7 739 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 CPAMD8Q8IZJ3 1885 aa18.93■□□□□ 0.62
VPS28-208ENST00000527797 PRR23D1E9PI22 279 aaPredicted RBP18.92■□□□□ 0.62
VPS28-208ENST00000527797 PLPP3O14495 311 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 IMPA2O14732 288 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 CEACAM4O75871 244 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 PRR23D2P0DMB1 279 aaPredicted RBP18.92■□□□□ 0.62
VPS28-208ENST00000527797 AHCYP23526 432 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 SFTPDP35247 375 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 ITGADQ13349 1161 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 ZNF362Q5T0B9 420 aaPredicted RBP18.92■□□□□ 0.62
VPS28-208ENST00000527797 IGFL2Q6UWQ7 119 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 KCTD8Q6ZWB6 473 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 H1FNTQ75WM6 255 aaPredicted RBP18.92■□□□□ 0.62
VPS28-208ENST00000527797 STX19Q8N4C7 294 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 FAM98AQ8NCA5 519 aaKnown RBP18.92■□□□□ 0.62
VPS28-208ENST00000527797 FAM83FQ8NEG4 500 aaPredicted RBP18.92■□□□□ 0.62
VPS28-208ENST00000527797 OR52E2Q8NGJ4 325 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 OTULINQ96BN8 352 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 VCX3AQ9NNX9 186 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 INIPQ9NRY2 104 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 DPPA5A6NC42 116 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 C11orf98E9PRG8 122 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 M0R3G1 203 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 RNF13O43567 381 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 DBTP11182 482 aaKnown RBP18.92■□□□□ 0.62
VPS28-208ENST00000527797 PIPP12273 146 aaPredicted RBP18.92■□□□□ 0.62
VPS28-208ENST00000527797 HIST1H1CP16403 213 aaKnown RBP18.92■□□□□ 0.62
VPS28-208ENST00000527797 PAICSP22234 425 aaKnown RBP18.92■□□□□ 0.62
VPS28-208ENST00000527797 SLC15A1P46059 708 aa18.92■□□□□ 0.62
VPS28-208ENST00000527797 RAC1P63000 192 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms