RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 GRIP2Q9C0E4 1043 aa12□□□□□ -0.49
TCOF1-215ENST00000515516 C12orf10Q9HB07 376 aa12□□□□□ -0.49
TCOF1-215ENST00000515516 SLC25A37Q9NYZ2 338 aa12□□□□□ -0.49
TCOF1-215ENST00000515516 SLAMF8Q9P0V8 285 aa12□□□□□ -0.49
TCOF1-215ENST00000515516 TRIM33Q9UPN9 1127 aa12□□□□□ -0.49
TCOF1-215ENST00000515516 CHST2Q9Y4C5 530 aa12□□□□□ -0.49
TCOF1-215ENST00000515516 ATP23Q9Y6H3 246 aa12□□□□□ -0.49
TCOF1-215ENST00000515516 FLNAP21333 2647 aaKnown RBP12□□□□□ -0.49
TCOF1-215ENST00000515516 VPS13CQ709C8 3753 aa12□□□□□ -0.49
TCOF1-215ENST00000515516 TMEM229AB2RXF0 380 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 NPIPB7O75200 414 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 ZNF43P17038 809 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 HOXB9P17482 250 aaPredicted RBP11.99□□□□□ -0.49
TCOF1-215ENST00000515516 PAX7P23759 505 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 PCSK6P29122 969 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 TTKP33981 857 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 RPS5P46782 204 aaKnown RBP11.99□□□□□ -0.49
TCOF1-215ENST00000515516 UBE2NP61088 152 aaKnown RBP11.99□□□□□ -0.49
TCOF1-215ENST00000515516 C1DQ13901 141 aaKnown RBP11.99□□□□□ -0.49
TCOF1-215ENST00000515516 SCARB2Q14108 478 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 NRF1Q16656 503 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 DHRS4L2Q6PKH6 230 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 DTX2Q86UW9 622 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 MSRB3Q8IXL7 192 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 ZIC4Q8N9L1 334 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 WDR31Q8NA23 367 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 DNAJA4Q8WW22 397 aaPredicted RBP11.99□□□□□ -0.49
TCOF1-215ENST00000515516 SLC38A4Q969I6 547 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 MAGEB18Q96M61 343 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 KCNS3Q9BQ31 491 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 AMBRA1Q9C0C7 1298 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 TMEM38AQ9H6F2 299 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 EVA1AQ9H8M9 152 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 TMEM27Q9HBJ8 222 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 CBLN4Q9NTU7 201 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 VAPAQ9P0L0 249 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 LEF1Q9UJU2 399 aaPredicted RBP11.99□□□□□ -0.49
TCOF1-215ENST00000515516 ANGPT4Q9Y264 503 aa11.99□□□□□ -0.49
TCOF1-215ENST00000515516 HEATR5AQ86XA9 2040 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 E7EQL1 145 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 RNF223E7ERA6 249 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 AIM2O14862 343 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 ANGPT2O15123 496 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 CD8AP01732 235 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 TP53P04637 393 aaPredicted RBP11.98□□□□□ -0.49
TCOF1-215ENST00000515516 PTNP21246 168 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 ACVR1BP36896 505 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 RAB35Q15286 201 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 ALG10BQ5I7T1 473 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 HMBOX1Q6NT76 420 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 ZNF544Q6NX49 715 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 ULK3Q6PHR2 472 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 C6orf89Q6UWU4 347 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 NET1Q7Z628 596 aaPredicted RBP11.98□□□□□ -0.49
TCOF1-215ENST00000515516 LSRQ86X29 649 aaPredicted RBP11.98□□□□□ -0.49
TCOF1-215ENST00000515516 ARMC8Q8IUR7 673 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 MUC15Q8N387 334 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 LSMEM1Q8N8F7 131 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 HIPK4Q8NE63 616 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 CKAP2Q8WWK9 683 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 KTI12Q96EK9 354 aaPredicted RBP11.98□□□□□ -0.49
TCOF1-215ENST00000515516 SLC47A1Q96FL8 570 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 THOC1Q96FV9 657 aaKnown RBP11.98□□□□□ -0.49
TCOF1-215ENST00000515516 VIPAS39Q9H9C1 493 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 OBP2BQ9NPH6 170 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 B3GALT5Q9Y2C3 310 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 NDUFAF1Q9Y375 327 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 GMEB1Q9Y692 573 aa11.98□□□□□ -0.49
TCOF1-215ENST00000515516 TRAV36DV7A0A075B6V5 113 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 A0A1B0GWA3 101 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 AKAP8O43823 692 aaKnown RBP11.97□□□□□ -0.49
TCOF1-215ENST00000515516 SSX4O60224 188 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 SLC43A1O75387 559 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 LGI1O95970 557 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 IGHV4-39P01824 125 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 GPX2P18283 190 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 AQP1P29972 269 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 SELENOPP49908 381 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 P2RY4P51582 365 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 NUDT6P53370 316 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 CLDN17P56750 224 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 RGS8P57771 180 aaPredicted RBP11.97□□□□□ -0.49
TCOF1-215ENST00000515516 CHRNB3Q05901 458 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 SPOCK1Q08629 439 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 MFSD13AQ14CX5 517 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 CYP51A1Q16850 503 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 HIKESHIQ53FT3 197 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 FAM69AQ5T7M9 428 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 FAM91A1Q658Y4 838 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 RANBP3LQ86VV4 465 aaPredicted RBP11.97□□□□□ -0.49
TCOF1-215ENST00000515516 EPHX4Q8IUS5 362 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 KDM8Q8N371 416 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 STON2Q8WXE9 905 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 OXGR1Q96P68 337 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 EPYCQ99645 322 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 SIKE1Q9BRV8 207 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 RHNO1Q9BSD3 238 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 CACNG6Q9BXT2 260 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 REG4Q9BYZ8 158 aa11.97□□□□□ -0.49
TCOF1-215ENST00000515516 MOV10Q9HCE1 1003 aaKnown RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms