RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 RNF165Q6ZSG1 346 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 PRSS41Q7RTY9 318 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 TGIF2LXQ8IUE1 241 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 NUDCD3Q8IVD9 361 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 PNKDQ8N490 385 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 OR1L4Q8NGR5 311 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 ELSPBP1Q96BH3 223 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 RPUSD4Q96CM3 377 aaKnown RBP2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 TM4SF19Q96DZ7 209 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 ZNF641Q96N77 438 aaPredicted RBP2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 KCNA7Q96RP8 456 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 AZI2Q9H6S1 392 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 RPS6KB2Q9UBS0 482 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 NEUROG3Q9Y4Z2 214 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 ASB3Q9Y575 518 aa2.79□□□□□ -1.96
HMGB1P28-201ENST00000507778 OR5B21A6NL26 309 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 OR52A4PA6NMU1 304 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 AGPAT2O15120 278 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 TOM1O60784 492 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 TBPP20226 339 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 MX1P20591 662 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 DRD3P35462 400 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 VDAC2P45880 294 aaPredicted RBP2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 DLX1P56177 255 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 DDX39BQ13838 428 aaKnown RBP2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 ATP6AP1Q15904 470 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 NRF1Q16656 503 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 ZNF630Q2M218 657 aaPredicted RBP2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 PHYHD1Q5SRE7 291 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 UQCC3Q6UW78 93 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 RUFY3Q7L099 469 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 NBPF5PQ86XG9 351 aaPredicted RBP2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 Q8N7P7 452 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 C20orf203Q8NBC4 194 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 OR6C4Q8NGE1 309 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 FAM151AQ8WW52 585 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 TBRG4Q969Z0 631 aaKnown RBP eCLIP2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 ITCHQ96J02 903 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 SLC35E1Q96K37 410 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 TRIM62Q9BVG3 475 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 ROPN1BQ9BZX4 212 aaPredicted RBP2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 ROGDIQ9GZN7 287 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 PPA2Q9H2U2 334 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 NIPAL2Q9H841 368 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 ABCB10Q9NRK6 738 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 ANAPC11Q9NYG5 84 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 KCNIP1Q9NZI2 227 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 MTRF1LQ9UGC7 380 aaKnown RBP2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 ZNF639Q9UID6 485 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 HPCAL4Q9UM19 191 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 KCNIP3Q9Y2W7 256 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 N6AMT1Q9Y5N5 214 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 IKBKGQ9Y6K9 419 aa2.78□□□□□ -1.96
HMGB1P28-201ENST00000507778 FANCIQ9NVI1 1328 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 CCDC182A6NF36 153 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 E9PBE3 544 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 HAS3O00219 553 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 FOXE1O00358 373 aaPredicted RBP2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 PALMO75781 387 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 KLF8O95600 359 aaPredicted RBP2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 ABOP16442 354 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 NCF2P19878 526 aaPredicted RBP2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 CMA1P23946 247 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 CD1CP29017 333 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 FMO3P31513 532 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 GYG1P46976 350 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 SCRN3Q0VDG4 424 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 GNMTQ14749 295 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 C2orf83Q53S99 150 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 C6orf226Q5I0X4 101 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 RFLNAQ6ZTI6 216 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 H2BFWTQ7Z2G1 175 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 PLA2G4DQ86XP0 818 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 ACOT4Q8N9L9 421 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 LINC01555Q8NAE3 123 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 FNDC5Q8NAU1 212 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 SUMF2Q8NBJ7 301 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 OR9G1Q8NH87 305 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 FAM110BQ8TC76 370 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 NT5C3BQ969T7 300 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 IFT74Q96LB3 600 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 NRIP2Q9BQI9 281 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 RIOK1Q9BRS2 568 aaKnown RBP2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 GBA3Q9H227 469 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 RNF167Q9H6Y7 350 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 NMRAL1Q9HBL8 299 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 IL26Q9NPH9 171 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 GIN1Q9NXP7 522 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 NYAP2Q9P242 653 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 SUN2Q9UH99 717 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 ADAMTS9Q9P2N4 1935 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 AGRNO00468 2067 aa2.77□□□□□ -1.97
HMGB1P28-201ENST00000507778 ARHGEF35A5YM69 484 aa2.76□□□□□ -1.97
HMGB1P28-201ENST00000507778 BTBD17A6NE02 478 aa2.76□□□□□ -1.97
HMGB1P28-201ENST00000507778 GJE1A6NN92 205 aa2.76□□□□□ -1.97
HMGB1P28-201ENST00000507778 TRIM49D1C9J1S8 452 aa2.76□□□□□ -1.97
HMGB1P28-201ENST00000507778 H0Y8G0 127 aa2.76□□□□□ -1.97
HMGB1P28-201ENST00000507778 NPIPB7O75200 414 aa2.76□□□□□ -1.97
HMGB1P28-201ENST00000507778 CHTF8P0CG12 524 aa2.76□□□□□ -1.97
HMGB1P28-201ENST00000507778 ICAM2P13598 275 aa2.76□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms