RNA–Protein interactions for RNA: ENST00000498325.5

HMGXB4-208, Transcript of HMG-box containing 4, humanhuman

TSL 3

Gene HMGXB4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-208ENST00000498325 RSPO3Q9BXY4 272 aaPredicted RBP4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 GABARAPL3Q9BY60 117 aa4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 ULBP3Q9BZM4 244 aa4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 WWTR1Q9GZV5 400 aa4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 NXF5Q9H1B4 397 aaKnown RBP4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 ADNPQ9H2P0 1102 aa4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 CTPS2Q9NRF8 586 aa4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 RLIMQ9NVW2 624 aa4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 TUBA8Q9NY65 449 aaPredicted RBP4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 SCN3BQ9NY72 215 aa4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 KCNE5Q9UJ90 142 aa4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 NDRG4Q9ULP0 352 aaKnown RBP4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 PPIEQ9UNP9 301 aaKnown RBP4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 DTX4Q9Y2E6 619 aa4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 TPRKBQ9Y3C4 175 aa4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 PTRH2Q9Y3E5 179 aaKnown RBP4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 CHST2Q9Y4C5 530 aa4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 CCDC88CQ9P219 2028 aa4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 SPTBN1Q01082 2364 aaKnown RBP4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 CRYBG3Q68DQ2 2970 aa4.83□□□□□ -1.64
HMGXB4-208ENST00000498325 A0A087WUU8 490 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 LOC102723996A0A087X1L8 192 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 A0A1W2PQD3 144 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 HTR3EA5X5Y0 456 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 CLDN24A6NM45 220 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 NPIPB9F8W1W9 429 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 H3BN98 237 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 ZNF264O43296 627 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 CHP2O43745 196 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 TSPAN2O60636 221 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 TPST2O60704 377 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 PFDN1O60925 122 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 CSO75390 466 aaKnown RBP4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 STK17BO94768 372 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 UTS2O95399 124 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 CLIC3O95833 236 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 NGFRP08138 427 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 GNAO1P09471 354 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 RAB40ALP0C0E4 278 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 CCDC159P0C7I6 412 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 GKN3PP0CG01 181 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 CYP4B1P13584 511 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 ICAM2P13598 275 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 POU2F1P14859 743 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 WT1P19544 449 aaPredicted RBP4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 EEF1B2P24534 225 aaKnown RBP4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 POU1F1P28069 291 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 GGT2P36268 569 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 FOLR3P41439 243 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 SLC6A8P48029 635 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 TMED10P49755 219 aaKnown RBP4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 GPR143P51810 404 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 ZNF136P52737 540 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 NR1H2P55055 460 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 SLC26A5P58743 744 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 GABARAPL2P60520 117 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 CXCR4P61073 352 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 ISL1P61371 349 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 RPS15P62841 145 aaKnown RBP4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 ALDH6A1Q02252 535 aaKnown RBP4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 CD47Q08722 323 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 TSPAN31Q12999 210 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 DCTN2Q13561 401 aaKnown RBP4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 RIN1Q13671 783 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 RAPSNQ13702 412 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 NCF4Q15080 339 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 PTGES3Q15185 160 aaKnown RBP4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 SEC23BQ15437 767 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 TGIF1Q15583 401 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 EXT1Q16394 746 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 NNATQ16517 81 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 MEP1AQ16819 746 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 KLHL26Q53HC5 615 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 ZNF770Q6IQ21 691 aaPredicted RBP4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 PGBD2Q6P3X8 592 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 FAM199XQ6PEV8 388 aaPredicted RBP4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 ULK3Q6PHR2 472 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 KLHL17Q6TDP4 642 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 CASP12Q6UXS9 341 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 MBOAT2Q6ZWT7 520 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 NUP54Q7Z3B4 507 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 ZER1Q7Z7L7 766 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 COMTD1Q86VU5 262 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 P3H2Q8IVL5 708 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 C9orf40Q8IXQ3 194 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 LILRB2Q8N423 598 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 LSMEM1Q8N8F7 131 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 NFAM1Q8NET5 270 aaPredicted RBP4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 OR2Y1Q8NGV0 311 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 OR4C3Q8NH37 302 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 WDR36Q8NI36 951 aaKnown RBP4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 NUBPLQ8TB37 319 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 SLC22A8Q8TCC7 542 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 DNAJA4Q8WW22 397 aaPredicted RBP4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 TMEM239Q8WW34 195 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 TRUB1Q8WWH5 349 aaKnown RBP4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 CNOT9Q92600 299 aaKnown RBP4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 EFHD2Q96C19 240 aaPredicted RBP4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 TMCO6Q96DC7 493 aa4.82□□□□□ -1.64
HMGXB4-208ENST00000498325 OMA1Q96E52 524 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms