RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 TYW3Q6IPR3 259 aaKnown RBP3.43□□□□□ -1.86
USP54-217ENST00000498213 KLC3Q6P597 504 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 SPSB3Q6PJ21 355 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 CYP20A1Q6UW02 462 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 PATL1Q86TB9 770 aaKnown RBP3.43□□□□□ -1.86
USP54-217ENST00000498213 TDRPQ86YL5 185 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 PLCZ1Q86YW0 608 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 GRAMD2AQ8IUY3 354 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 ZNF615Q8N8J6 731 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 SNX31Q8N9S9 440 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 L3MBTL4Q8NA19 623 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 STEAP2Q8NFT2 490 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 OR10G3Q8NGC4 313 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 OR4K14Q8NGD5 310 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 OR6K3Q8NGY3 331 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 KIF18AQ8NI77 898 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 MRAPQ8TCY5 172 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 ADIPOR1Q96A54 375 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 PYCR2Q96C36 320 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 GMPPAQ96IJ6 420 aaPredicted RBP3.43□□□□□ -1.86
USP54-217ENST00000498213 BTBD9Q96Q07 612 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 GPR22Q99680 433 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 NAPGQ99747 312 aaPredicted RBP3.43□□□□□ -1.86
USP54-217ENST00000498213 MED18Q9BUE0 208 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 NTMT1Q9BV86 223 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 OSBPL11Q9BXB4 747 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 TSPYL1Q9H0U9 437 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 METTL7AQ9H8H3 244 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 C3orf14Q9HBI5 128 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 PROK2Q9HC23 129 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 OPTCQ9UBM4 332 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.43□□□□□ -1.86
USP54-217ENST00000498213 GRID1Q9ULK0 1009 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 ZNF490Q9ULM2 529 aaPredicted RBP3.43□□□□□ -1.86
USP54-217ENST00000498213 MGAT4BQ9UQ53 548 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 LIPT1Q9Y234 373 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 PAM16Q9Y3D7 125 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 TEX264Q9Y6I9 313 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 V9GYY5 206 aaPredicted RBP3.43□□□□□ -1.86
USP54-217ENST00000498213 ALPK2Q86TB3 2170 aa3.43□□□□□ -1.86
USP54-217ENST00000498213 MALRD1Q5VYJ5 2156 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 COL7A1Q02388 2944 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 STAB2Q8WWQ8 2551 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 GOLGA8QA0A0J9YX86 632 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 A0A1W2PNV4 684 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 GOLGA8OA6NCC3 632 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 KRT87PA6NCN2 255 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 FAM90A20PA6NIJ5 464 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 A8MUA0 341 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 GOLGA8NF8WBI6 632 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 SLCO1B7G3V0H7 640 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 G3V3Y1 287 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 STX16-NPEPL1H3BU86 382 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 GOLGA8RI6L899 631 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 NDUFS8O00217 210 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 STX16O14662 325 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 HS3ST1O14792 307 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 SMAD9O15198 467 aaKnown RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 ADAMDEC1O15204 470 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 FGF17O60258 216 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 PRKNO60260 465 aaPredicted RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 PLOD3O60568 738 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 TRAPPC6AO75865 159 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 ZNF432O94892 652 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 SLU7O95391 586 aaKnown RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 TBX6O95947 436 aaPredicted RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 IGKV3-20P01619 116 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 FAM58BPP0C7Q3 252 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 CPMP14384 443 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 POU2F1P14859 743 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 ETS1P14921 441 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 SLC25A16P16260 332 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 PORP16435 677 aaPredicted RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 NT5EP21589 574 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 TBXA2RP21731 343 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 GPX3P22352 226 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 LOXP28300 417 aaPredicted RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 ELK4P28324 431 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 STX2P32856 288 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 SPRP35270 261 aaPredicted RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 CPOXP36551 454 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 PIGAP37287 484 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 LHX2P50458 406 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 PDLIM4P50479 330 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 PRKAA2P54646 552 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 NAGLUP54802 743 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 RAB10P61026 200 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 HERVK_113P63132 956 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 ERVK-8P63133 956 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 HMGCS1Q01581 520 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 POU3F1Q03052 451 aaPredicted RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 LGALS3BPQ08380 585 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 C2orf54Q08AI8 447 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 IFT88Q13099 833 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 SLMAPQ14BN4 828 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 HEPACAMQ14CZ8 416 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 RNPS1Q15287 305 aaKnown RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 VPS26BQ4G0F5 336 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 GRTP1Q5TC63 336 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 ZNF704Q6ZNC4 412 aaPredicted RBP3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms