RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 LHFPL3Q86UP9 236 aa11.08□□□□□ -0.64
HDAC6-230ENST00000488543 UBQLNLQ8IYU4 475 aa11.08□□□□□ -0.64
HDAC6-230ENST00000488543 DTX3Q8N9I9 347 aa11.08□□□□□ -0.64
HDAC6-230ENST00000488543 CT55Q8WUE5 264 aa11.08□□□□□ -0.64
HDAC6-230ENST00000488543 TP53INP1Q96A56 240 aa11.08□□□□□ -0.64
HDAC6-230ENST00000488543 SLC38A2Q96QD8 506 aa11.08□□□□□ -0.64
HDAC6-230ENST00000488543 ZPBPQ9BS86 351 aa11.08□□□□□ -0.64
HDAC6-230ENST00000488543 SRRQ9GZT4 340 aa11.08□□□□□ -0.64
HDAC6-230ENST00000488543 CRNNQ9UBG3 495 aaPredicted RBP11.08□□□□□ -0.64
HDAC6-230ENST00000488543 RPS6KB2Q9UBS0 482 aa11.08□□□□□ -0.64
HDAC6-230ENST00000488543 RPL36Q9Y3U8 105 aaKnown RBP11.08□□□□□ -0.64
HDAC6-230ENST00000488543 A0A087WUJ7 227 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 A0A1W2PQD3 144 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 A0A1W2PQL4 384 aaPredicted RBP11.07□□□□□ -0.64
HDAC6-230ENST00000488543 SLC35F4A4IF30 521 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 TMEM200CA6NKL6 621 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 BHLHE40O14503 412 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 GNB5O14775 395 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 LALBAP00709 142 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 HPGDP15428 266 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 EIF3IQ13347 325 aaKnown RBP11.07□□□□□ -0.64
HDAC6-230ENST00000488543 GPR50Q13585 617 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 OR2Y1Q8NGV0 311 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 DNAJA4Q8WW22 397 aaPredicted RBP11.07□□□□□ -0.64
HDAC6-230ENST00000488543 C1GALT1C1Q96EU7 318 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 LPAR4Q99677 370 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 LAT2Q9GZY6 243 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 PLEKHB1Q9UF11 243 aaPredicted RBP11.07□□□□□ -0.64
HDAC6-230ENST00000488543 ZNF221Q9UK13 617 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 SSR3Q9UNL2 185 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 CMAHPQ9Y471 501 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 HS3ST3B1Q9Y662 390 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 PCNX3Q9H6A9 2034 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 MPDZO75970 2070 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 IGKV1D-42A0A075B6H8 117 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 A0A0B4J293 547 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 ALG1L2C9J202 215 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 IDH3BO43837 385 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 FADS1O60427 444 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 SLC2A10O95528 541 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 KRT8P05787 483 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 CYC1P08574 325 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 CSRP1P21291 193 aaKnown RBP11.07□□□□□ -0.64
HDAC6-230ENST00000488543 ZNF117Q03924 483 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 TBRG1Q3YBR2 411 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 AADACL4Q5VUY2 407 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 MARCH3Q86UD3 253 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 OR2T33Q8NG76 320 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 DIRAS2Q96HU8 199 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 FYTTD1Q96QD9 318 aaKnown RBP11.07□□□□□ -0.64
HDAC6-230ENST00000488543 SEC14L4Q9UDX3 406 aa11.07□□□□□ -0.64
HDAC6-230ENST00000488543 A0A075B6Q4 140 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 TRAV27A0A087WT01 109 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 GTPBP1O00178 669 aaKnown RBP11.06□□□□□ -0.64
HDAC6-230ENST00000488543 CEACAM1P13688 526 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 SLC26A5P58743 744 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 CRYZQ08257 329 aaKnown RBP11.06□□□□□ -0.64
HDAC6-230ENST00000488543 CRTC2Q53ET0 693 aaPredicted RBP11.06□□□□□ -0.64
HDAC6-230ENST00000488543 WBP2NLQ6ICG8 309 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 ATG4DQ86TL0 474 aaPredicted RBP11.06□□□□□ -0.64
HDAC6-230ENST00000488543 CDK20Q8IZL9 346 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 ANKK1Q8NFD2 765 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 BBS1Q8NFJ9 593 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 OR4F15Q8NGB8 312 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 NUBPLQ8TB37 319 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 OTULINQ96BN8 352 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 RNFT2Q96EX2 444 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 ST6GAL2Q96JF0 529 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 C11orf54Q9H0W9 315 aaPredicted RBP11.06□□□□□ -0.64
HDAC6-230ENST00000488543 MCCC2Q9HCC0 563 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 MED17Q9NVC6 651 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 MRPS18AQ9NVS2 196 aaKnown RBP11.06□□□□□ -0.64
HDAC6-230ENST00000488543 COMMD3Q9UBI1 195 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 NUFIP1Q9UHK0 495 aaKnown RBP11.06□□□□□ -0.64
HDAC6-230ENST00000488543 NXT1Q9UKK6 140 aaKnown RBP11.06□□□□□ -0.64
HDAC6-230ENST00000488543 TCFL5Q9UL49 500 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 NOX1Q9Y5S8 564 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 MRPS18BQ9Y676 258 aaKnown RBP11.06□□□□□ -0.64
HDAC6-230ENST00000488543 FRYQ5TBA9 3013 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 TRBV11-1A0A0K0K1C0 115 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 OR6C70A6NIJ9 312 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 PRODHO43272 600 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 RCBTB2O95199 551 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 RAB36O95755 333 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 CSF3P09919 207 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 TSPAN19P0C672 248 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 SAGP10523 405 aaPredicted RBP11.06□□□□□ -0.64
HDAC6-230ENST00000488543 GABREP78334 506 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 FABP5Q01469 135 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 RUNX1T1Q06455 604 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 PCOLCEQ15113 449 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 ZNF791Q3KP31 576 aaPredicted RBP11.06□□□□□ -0.64
HDAC6-230ENST00000488543 SMARCD3Q6STE5 483 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 LNX2Q8N448 690 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 CHAC2Q8WUX2 184 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 CCDC32Q9BV29 185 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 TMED9Q9BVK6 235 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 DLL3Q9NYJ7 618 aa11.06□□□□□ -0.64
HDAC6-230ENST00000488543 FARSAQ9Y285 508 aaKnown RBP11.06□□□□□ -0.64
HDAC6-230ENST00000488543 ZC3H12DA2A288 527 aaKnown RBP11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms