RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 SHMT2P34897 504 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 BTCP35070 178 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 SOX6P35712 828 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 ACAA2P42765 397 aaKnown RBP1.32□□□□□ -2.2
SMC4-220ENST00000488017 VDAC2P45880 294 aaPredicted RBP1.32□□□□□ -2.2
SMC4-220ENST00000488017 TAS2R19P59542 299 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 SLAQ13239 276 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 SLC15A2Q16348 729 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 PDK4Q16654 411 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 NRF1Q16656 503 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 PIGGQ5H8A4 983 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 C1orf100Q5SVJ3 147 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 OR2G6Q5TZ20 316 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 OR52W1Q6IF63 320 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 SLC25A24Q6NUK1 477 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 C6orf89Q6UWU4 347 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 ZNF571Q7Z3V5 609 aaPredicted RBP1.32□□□□□ -2.2
SMC4-220ENST00000488017 C6orf120Q7Z4R8 191 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 RDH10Q8IZV5 341 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 OR51S1Q8NGJ8 323 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 ZNF596Q8TC21 504 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 TMEM158Q8WZ71 300 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 STARD8Q92502 1023 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 ARPC1AQ92747 370 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 CMTM7Q96FZ5 175 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 PAGE5Q96GU1 130 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 C7orf34Q96L11 122 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 TTC25Q96NG3 672 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 TGM7Q96PF1 710 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 SPIN2AQ99865 258 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 SPIN2BQ9BPZ2 258 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 NAT9Q9BTE0 207 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 OR11A1Q9GZK7 315 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 POLR1EQ9GZS1 481 aaKnown RBP1.32□□□□□ -2.2
SMC4-220ENST00000488017 C20orf85Q9H1P6 137 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 RIBC2Q9H4K1 309 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 RNF167Q9H6Y7 350 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 SUDS3Q9H7L9 328 aaPredicted RBP1.32□□□□□ -2.2
SMC4-220ENST00000488017 FOLH1BQ9HBA9 442 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 NUDT15Q9NV35 164 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 SDAD1Q9NVU7 687 aaKnown RBP eCLIP1.32□□□□□ -2.2
SMC4-220ENST00000488017 CGNQ9P2M7 1197 aaKnown RBP1.32□□□□□ -2.2
SMC4-220ENST00000488017 PCSK1NQ9UHG2 260 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 AP1M2Q9Y6Q5 423 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 SH3TC1Q8TE82 1336 aa1.32□□□□□ -2.2
SMC4-220ENST00000488017 ATP10AO60312 1499 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 NSG1A0A0A6YYJ2 146 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 BICDL2A1A5D9 508 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 METTL21EPA6NDL7 271 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 IDSB3KWA1 339 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 E9PBE3 544 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 HIP1O00291 1037 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 LAD1O00515 517 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 TBX19O60806 448 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 N4BP1O75113 896 aaKnown RBP1.31□□□□□ -2.2
SMC4-220ENST00000488017 SPAG7O75391 227 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 GUCA1CO95843 209 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 IGHG4P01861 327 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 KRT8P05787 483 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 PNMTP11086 282 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 COX5AP20674 150 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 IMPDH1P20839 514 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 PCMT1P22061 227 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 HMGB2P26583 209 aaKnown RBP1.31□□□□□ -2.2
SMC4-220ENST00000488017 PSMA5P28066 241 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 LAP3P28838 519 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 CALCRP30988 508 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 HOXA9P31269 272 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 RDXP35241 583 aaKnown RBP1.31□□□□□ -2.2
SMC4-220ENST00000488017 KIR2DS4P43632 304 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 GSSP48637 474 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 TDO2P48775 406 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 PPT1P50897 306 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 KPNA2P52292 529 aaKnown RBP1.31□□□□□ -2.2
SMC4-220ENST00000488017 CBX1P83916 185 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 MEF2BQ02080 365 aaPredicted RBP1.31□□□□□ -2.2
SMC4-220ENST00000488017 RIPK1Q13546 671 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 TPD52L1Q16890 204 aaPredicted RBP1.31□□□□□ -2.2
SMC4-220ENST00000488017 DEFB116Q30KQ4 102 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 C5orf47Q569G3 176 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 TTC23Q5W5X9 447 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 TIGD3Q6B0B8 471 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 CTRB2Q6GPI1 263 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 C11orf71Q6IPW1 123 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 ZNF620Q6ZNG0 422 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 CCDC80Q76M96 950 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 CAMK2N1Q7Z7J9 78 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 SLC26A11Q86WA9 606 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 PAQR7Q86WK9 346 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 CCDC65Q8IXS2 484 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 SLC35F2Q8IXU6 374 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 ANKFN1Q8N957 763 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 SYT14Q8NB59 555 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 OR6C4Q8NGE1 309 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 OR2T3Q8NH03 318 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 OR9G1Q8NH87 305 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 FANK1Q8TC84 345 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 ACER1Q8TDN7 264 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 HTR3CQ8WXA8 447 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 NDRG1Q92597 394 aaKnown RBP1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms