RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.23□□□□□ -0.29
MCF2L-228ENST00000487354 FBXO9Q9UK97 447 aaPredicted RBP13.23□□□□□ -0.29
MCF2L-228ENST00000487354 WNK2Q9Y3S1 2297 aa13.23□□□□□ -0.29
MCF2L-228ENST00000487354 SH3PXD2BA1X283 911 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 AGAP5A6NIR3 686 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 HMGN4O00479 90 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 FRS3O43559 492 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 ZNF432O94892 652 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 GPIP06744 558 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 CBR1P16152 277 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 KRT4P19013 534 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 PCMT1P22061 227 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 PAX7P23759 505 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 IL1RL1Q01638 556 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 ZCCHC23Q6ZST2 131 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 USP43Q70EL4 1123 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 CMIPQ8IY22 773 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 GSPT2Q8IYD1 628 aaKnown RBP13.22□□□□□ -0.29
MCF2L-228ENST00000487354 OR8J2Q8NGG1 315 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 OR4A15Q8NGL6 344 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 ZNF837Q96EG3 531 aaPredicted RBP13.22□□□□□ -0.29
MCF2L-228ENST00000487354 NEURL3Q96EH8 262 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 LINC00470Q9BZP3 86 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 LPAR2Q9HBW0 351 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 NOX3Q9HBY0 568 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 ASIC5Q9NY37 505 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 ZDHHC2Q9UIJ5 367 aa13.22□□□□□ -0.29
MCF2L-228ENST00000487354 RPL36A-HNRNPH2H7BZ11 118 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 NPIPB7O75200 414 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 AGR2O95994 175 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 HPXP02790 462 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 MSMBP08118 114 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 UQCRC2P22695 453 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 MAP2K6P52564 334 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 ROR2Q01974 943 aaKnown RBP13.21□□□□□ -0.29
MCF2L-228ENST00000487354 BNIP2Q12982 314 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 MAPK11Q15759 364 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 SYPL1Q16563 259 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 AWAT1Q58HT5 328 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 MRPL2Q5T653 305 aaKnown RBP13.21□□□□□ -0.29
MCF2L-228ENST00000487354 ATAD3BQ5T9A4 648 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 NIPAL3Q6P499 406 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 UGT2A3Q6UWM9 527 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 THSD4Q6ZMP0 1018 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 EPS8L3Q8TE67 593 aaKnown RBP13.21□□□□□ -0.29
MCF2L-228ENST00000487354 GCDHQ92947 438 aaPredicted RBP13.21□□□□□ -0.29
MCF2L-228ENST00000487354 YIPF5Q969M3 257 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 ANKRD27Q96NW4 1050 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 MRPL37Q9BZE1 423 aaKnown RBP13.21□□□□□ -0.29
MCF2L-228ENST00000487354 NARFLQ9H6Q4 476 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 DYNLRB1Q9NP97 96 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 ESM1Q9NQ30 184 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 G6PC2Q9NQR9 355 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 MKS1Q9NXB0 559 aa13.21□□□□□ -0.29
MCF2L-228ENST00000487354 OR6C65A6NJZ3 312 aa13.2□□□□□ -0.3
MCF2L-228ENST00000487354 FTCDNL1E5RQL4 147 aa13.2□□□□□ -0.3
MCF2L-228ENST00000487354 NCR1O76036 304 aa13.2□□□□□ -0.3
MCF2L-228ENST00000487354 ERCC1P07992 297 aaPredicted RBP13.2□□□□□ -0.3
MCF2L-228ENST00000487354 GAAP10253 952 aa13.2□□□□□ -0.3
MCF2L-228ENST00000487354 COL8A2P25067 703 aa13.2□□□□□ -0.3
MCF2L-228ENST00000487354 ACAA2P42765 397 aaKnown RBP13.2□□□□□ -0.3
MCF2L-228ENST00000487354 LMO4P61968 165 aa13.2□□□□□ -0.3
MCF2L-228ENST00000487354 ARF1P84077 181 aaKnown RBP13.2□□□□□ -0.3
MCF2L-228ENST00000487354 EMX2Q04743 252 aa13.2□□□□□ -0.3
MCF2L-228ENST00000487354 SNTB2Q13425 540 aaKnown RBP13.2□□□□□ -0.3
MCF2L-228ENST00000487354 GPAT3Q53EU6 434 aa13.2□□□□□ -0.3
MCF2L-228ENST00000487354 MDP1Q86V88 176 aa13.2□□□□□ -0.3
MCF2L-228ENST00000487354 ZNF418Q8TF45 676 aaPredicted RBP13.2□□□□□ -0.3
MCF2L-228ENST00000487354 ZNF75AQ96N20 296 aa13.2□□□□□ -0.3
MCF2L-228ENST00000487354 LRRC37BQ96QE4 947 aa13.2□□□□□ -0.3
MCF2L-228ENST00000487354 ADPRHL2Q9NX46 363 aa13.2□□□□□ -0.3
MCF2L-228ENST00000487354 SLC17A7Q9P2U7 560 aa13.2□□□□□ -0.3
MCF2L-228ENST00000487354 B3GAT1Q9P2W7 334 aa13.2□□□□□ -0.3
MCF2L-228ENST00000487354 MID2Q9UJV3 735 aa13.2□□□□□ -0.3
MCF2L-228ENST00000487354 PCDHB10Q9UN67 800 aa13.2□□□□□ -0.3
MCF2L-228ENST00000487354 ARHGAP32A7KAX9 2087 aa13.2□□□□□ -0.3
MCF2L-228ENST00000487354 CFAP73A6NFT4 308 aa13.19□□□□□ -0.3
MCF2L-228ENST00000487354 TMPRSS2O15393 492 aa13.19□□□□□ -0.3
MCF2L-228ENST00000487354 FZD7O75084 574 aa13.19□□□□□ -0.3
MCF2L-228ENST00000487354 RP2O75695 350 aa13.19□□□□□ -0.3
MCF2L-228ENST00000487354 KRT33AO76009 404 aa13.19□□□□□ -0.3
MCF2L-228ENST00000487354 SAGP10523 405 aaPredicted RBP13.19□□□□□ -0.3
MCF2L-228ENST00000487354 HOXB1P14653 301 aaPredicted RBP13.19□□□□□ -0.3
MCF2L-228ENST00000487354 EPHA1P21709 976 aa13.19□□□□□ -0.3
MCF2L-228ENST00000487354 SH3BGRP55822 239 aaPredicted RBP13.19□□□□□ -0.3
MCF2L-228ENST00000487354 DAG1Q14118 895 aa13.19□□□□□ -0.3
MCF2L-228ENST00000487354 KRT80Q6KB66 452 aa13.19□□□□□ -0.3
MCF2L-228ENST00000487354 MRPL24Q96A35 216 aaKnown RBP13.19□□□□□ -0.3
MCF2L-228ENST00000487354 TUBGCP3Q96CW5 907 aa13.19□□□□□ -0.3
MCF2L-228ENST00000487354 APOPT1Q96IL0 206 aa13.19□□□□□ -0.3
MCF2L-228ENST00000487354 C16orf45Q96MC5 204 aaPredicted RBP13.19□□□□□ -0.3
MCF2L-228ENST00000487354 TRNT1Q96Q11 434 aaKnown RBP13.19□□□□□ -0.3
MCF2L-228ENST00000487354 PTDSS2Q9BVG9 487 aa13.19□□□□□ -0.3
MCF2L-228ENST00000487354 RBM4Q9BWF3 364 aaKnown RBP13.19□□□□□ -0.3
MCF2L-228ENST00000487354 MOV10Q9HCE1 1003 aaKnown RBP13.19□□□□□ -0.3
MCF2L-228ENST00000487354 RLIMQ9NVW2 624 aa13.19□□□□□ -0.3
MCF2L-228ENST00000487354 TREM2Q9NZC2 230 aa13.19□□□□□ -0.3
MCF2L-228ENST00000487354 MYEF2Q9P2K5 600 aaKnown RBP13.19□□□□□ -0.3
MCF2L-228ENST00000487354 SEC14L4Q9UDX3 406 aa13.19□□□□□ -0.3
MCF2L-228ENST00000487354 USP22Q9UPT9 525 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms