RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SLC48A1Q6P1K1 146 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 SH2D5Q6ZV89 423 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 EMC7Q9NPA0 242 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 TMEM100Q9NV29 134 aa15.26■□□□□ 0.03
COL7A1-210ENST00000487017 GJA4P35212 333 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 FAPQ12884 760 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 ACTBL2Q562R1 376 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 ATG4BQ9Y4P1 393 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 LOC102725191A0A1B0GVB3 256 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 A6NL46 340 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 BMP1P13497 986 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 RPS2P15880 293 aaKnown RBP15.25■□□□□ 0.03
COL7A1-210ENST00000487017 HTR2CP28335 458 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 DDOSTP39656 456 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 FOXB2Q5VYV0 432 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 GAREM2Q75VX8 874 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 MALSU1Q96EH3 234 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 TCTN2Q96GX1 697 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 SLC41A2Q96JW4 573 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 NMNAT3Q96T66 252 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 HOXB5P09067 269 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 MMP11P24347 488 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 APLNRP35414 380 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 IDH3GP51553 393 aaPredicted RBP15.25■□□□□ 0.03
COL7A1-210ENST00000487017 GPLD1P80108 840 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 FGL2Q14314 439 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 MPEG1Q2M385 716 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 SVBPQ8N300 66 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 LILRA3Q8N6C8 439 aaPredicted RBP15.25■□□□□ 0.03
COL7A1-210ENST00000487017 HRH4Q9H3N8 390 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 SLC22A23A1A5C7 686 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 H7C1C5 153 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 PTBP1P26599 531 aaKnown RBP eCLIP15.25■□□□□ 0.03
COL7A1-210ENST00000487017 TACR3P29371 465 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 FOLR3P41439 243 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 LCN6P62502 163 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 SUMF2Q8NBJ7 301 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 OR14A2Q96R54 314 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 WDR76Q9H967 626 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 PRSS16Q9NQE7 514 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 NDRG4Q9ULP0 352 aaKnown RBP15.25■□□□□ 0.03
COL7A1-210ENST00000487017 ANKRD36CQ5JPF3 1778 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 A0A1B0GWA3 101 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 CD300LBA8K4G0 201 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 SUSD5O60279 629 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 RPL23AP62750 156 aaKnown RBP15.25■□□□□ 0.03
COL7A1-210ENST00000487017 SSX2Q16385 188 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 C11orf91Q3C1V1 193 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 CADM3Q8N126 398 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 MIB2Q96AX9 1013 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 LIN37Q96GY3 246 aaPredicted RBP15.25■□□□□ 0.03
COL7A1-210ENST00000487017 CUTCQ9NTM9 273 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 CA5BQ9Y2D0 317 aa15.25■□□□□ 0.03
COL7A1-210ENST00000487017 LAMB1P07942 1786 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 TRBV11-1A0A0K0K1C0 115 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 OPN1LWP04000 364 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 ZP2Q05996 745 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 BTN1A1Q13410 526 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 SLC9A3R2Q15599 337 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 FAM78AQ5JUQ0 283 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 DPY19L2P2Q6ZN68 376 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 OR4K15Q8NH41 348 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 TMEM106AQ96A25 262 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 ARL5BQ96KC2 179 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 ZNF681Q96N22 645 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 ZIC5Q96T25 663 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 HDAC8Q9BY41 377 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 ETV7Q9Y603 341 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 A0A1W2PS29 197 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 B4DXG7 233 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 EFNA3P52797 238 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 SCGB2A2Q13296 93 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 C14orf28Q4W4Y0 310 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 EXOSC6Q5RKV6 272 aaKnown RBP15.24■□□□□ 0.03
COL7A1-210ENST00000487017 C1QTNF3Q9BXJ4 246 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 SLC25A31Q9H0C2 315 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 TCRBV5S2A0A599 114 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 GALR3O60755 368 aaPredicted RBP15.24■□□□□ 0.03
COL7A1-210ENST00000487017 RAB4AP20338 218 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 TSFMP43897 325 aaKnown RBP15.24■□□□□ 0.03
COL7A1-210ENST00000487017 CSNK1G2P78368 415 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 MAT1AQ00266 395 aaKnown RBP15.24■□□□□ 0.03
COL7A1-210ENST00000487017 ABHD17BQ5VST6 288 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 SLC35D2Q76EJ3 337 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 C19orf47Q8N9M1 422 aaKnown RBP15.24■□□□□ 0.03
COL7A1-210ENST00000487017 LMAN1LQ9HAT1 526 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 TRPM3Q9HCF6 1732 aaPredicted RBP15.24■□□□□ 0.03
COL7A1-210ENST00000487017 ARGFXA6NJG6 315 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 ANKRD30BLA7E2S9 258 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 FAM155AB1AL88 458 aaPredicted RBP15.24■□□□□ 0.03
COL7A1-210ENST00000487017 MAKP20794 623 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 VEGFCP49767 419 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 YIF1BQ5BJH7 314 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 OR5M10Q6IEU7 315 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 ZNF836Q6ZNA1 936 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 SLC43A2Q8N370 569 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 WFDC5Q8TCV5 224 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 SLC25A46Q96AG3 418 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 MICU1Q9BPX6 476 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 SERTAD4Q9NUC0 356 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms