RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 SHISA3A0PJX4 238 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 GTPBP1O00178 669 aaKnown RBP13.17□□□□□ -0.3
CHD3-211ENST00000481999 SCDO00767 359 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 DVL2O14641 736 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 SCO2O43819 266 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 PTP4A3O75365 173 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 NCR1O76036 304 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 UBL4AP11441 157 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 HLA-DMAP28067 261 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 MTNR1BP49286 362 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 HCCSP53701 268 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 ZNF117Q03924 483 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 MADCAM1Q13477 382 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 LYPD4Q6UWN0 246 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 LINC00114Q6XXX2 140 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 TMEM91Q6ZNR0 172 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 KMT5CQ86Y97 462 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 RFLNBQ8N5W9 214 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 SDR9C7Q8NEX9 313 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 OR4D9Q8NGE8 314 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 OR1N1Q8NGS0 311 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 ZPLD1Q8TCW7 415 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 RNF32Q9H0A6 362 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 CCDC86Q9H6F5 360 aaKnown RBP13.17□□□□□ -0.3
CHD3-211ENST00000481999 ISG20L2Q9H9L3 353 aaKnown RBP13.17□□□□□ -0.3
CHD3-211ENST00000481999 MALT1Q9UDY8 824 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 SUSD2Q9UGT4 822 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 ZNF346Q9UL40 294 aaKnown RBP13.17□□□□□ -0.3
CHD3-211ENST00000481999 FRG2CA6NGY1 282 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 RNF13O43567 381 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 HCRTR2O43614 444 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 RCBTB2O95199 551 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 CCL4P13236 92 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 PLCXD2Q0VAA5 305 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 P2RY14Q15391 338 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 ZNF550Q7Z398 422 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 CDK20Q8IZL9 346 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 CARFQ8N187 725 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 UBE2J2Q8N2K1 259 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 LNX2Q8N448 690 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 SLC37A3Q8NCC5 494 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 OR4K13Q8NH42 304 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 ZNRF4Q8WWF5 429 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 NPAS1Q99742 590 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 ALG8Q9BVK2 526 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 MKKSQ9NPJ1 570 aaPredicted RBP13.17□□□□□ -0.3
CHD3-211ENST00000481999 KLHL1Q9NR64 748 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 INPP5EQ9NRR6 644 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 C14orf105Q9NVL8 296 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 NUFIP1Q9UHK0 495 aaKnown RBP13.17□□□□□ -0.3
CHD3-211ENST00000481999 TMEM5Q9Y2B1 443 aa13.17□□□□□ -0.3
CHD3-211ENST00000481999 EP300Q09472 2414 aaPredicted RBP13.17□□□□□ -0.3
CHD3-211ENST00000481999 A0A087WUJ7 227 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 MAGEB4O15481 346 aaPredicted RBP13.16□□□□□ -0.3
CHD3-211ENST00000481999 IL12BP29460 328 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 CTBP2P56545 445 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 RPS7P62081 194 aaKnown RBP13.16□□□□□ -0.3
CHD3-211ENST00000481999 CDK10Q15131 360 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 C1QL3Q5VWW1 255 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 UTS2BQ765I0 119 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 TMEM99Q8N816 258 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 ASCC1Q8N9N2 400 aaKnown RBP13.16□□□□□ -0.3
CHD3-211ENST00000481999 APCDD1LQ8NCL9 501 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 UBASH3BQ8TF42 649 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 PMM1Q92871 262 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 DAZLQ92904 295 aaKnown RBP13.16□□□□□ -0.3
CHD3-211ENST00000481999 KISS1RQ969F8 398 aaPredicted RBP13.16□□□□□ -0.3
CHD3-211ENST00000481999 OMA1Q96E52 524 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 PELOQ9BRX2 385 aaKnown RBP13.16□□□□□ -0.3
CHD3-211ENST00000481999 TMEM43Q9BTV4 400 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 TRIM36Q9NQ86 728 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 RARRES3Q9UL19 164 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 KNTC1P50748 2209 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 A0A0B4J293 547 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 MASP2O00187 686 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 DLL1O00548 723 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 ZNF264O43296 627 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 HIST1H1CP16403 213 aaKnown RBP13.16□□□□□ -0.3
CHD3-211ENST00000481999 GALNSP34059 522 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 GPR143P51810 404 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 EGR4Q05215 589 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 HLA-DQA1Q5Y7H0 255 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 BICRALQ6AI39 1079 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 FAM71CQ8NEG0 241 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 DUSP18Q8NEJ0 188 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 NLGN4YQ8NFZ3 816 aaPredicted RBP13.16□□□□□ -0.3
CHD3-211ENST00000481999 B3GAT2Q9NPZ5 323 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 CMC2Q9NRP2 79 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 COPS7AQ9UBW8 275 aa13.16□□□□□ -0.3
CHD3-211ENST00000481999 SPENQ96T58 3664 aaKnown RBP13.15□□□□□ -0.3
CHD3-211ENST00000481999 DAPL1A0PJW8 107 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 SLC22A31A6NKX4 558 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 LYRM1O43325 122 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 NUDT14O95848 222 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 YES1P07947 543 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 CD53P19397 219 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 F8A1P23610 371 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 ITPKBP27987 946 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 INPP1P49441 399 aa13.15□□□□□ -0.3
CHD3-211ENST00000481999 NOXA1Q86UR1 476 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms