RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 RNASE10Q5GAN6 216 aaKnown RBP13.48□□□□□ -0.25
HDAC6-220ENST00000477528 TMEM201Q5SNT2 666 aa13.48□□□□□ -0.25
HDAC6-220ENST00000477528 TMEM244Q5VVB8 128 aa13.48□□□□□ -0.25
HDAC6-220ENST00000477528 TMPRSS9Q7Z410 1059 aa13.48□□□□□ -0.25
HDAC6-220ENST00000477528 CASTOR1Q8WTX7 329 aa13.48□□□□□ -0.25
HDAC6-220ENST00000477528 METTL8Q9H825 291 aaKnown RBP13.48□□□□□ -0.25
HDAC6-220ENST00000477528 NCDNQ9UBB6 729 aa13.48□□□□□ -0.25
HDAC6-220ENST00000477528 TMEM212A6NML5 194 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 H7C1C5 153 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 LAMTOR5O43504 91 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 ATP1B1P05026 303 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 GLULP15104 373 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 LCN6P62502 163 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 GALK2Q01415 458 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 YIF1BQ5BJH7 314 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 LYSMD4Q5XG99 296 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 BTLAQ7Z6A9 289 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 MISPQ8IVT2 679 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 BCORP1Q8N888 145 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 RASD2Q96D21 266 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 PSD2Q9BQI7 771 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 DPCDQ9BVM2 203 aaPredicted RBP13.47□□□□□ -0.25
HDAC6-220ENST00000477528 WDR76Q9H967 626 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 DCDC2BA2VCK2 349 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 APOC1P02654 83 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 PTH2RP49190 550 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 KCTD9Q7L273 389 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 LGALS14Q8TCE9 139 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 WDR77Q9BQA1 342 aaPredicted RBP13.47□□□□□ -0.25
HDAC6-220ENST00000477528 FGF21Q9NSA1 209 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 POMT2Q9UKY4 750 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 A0A1W2PPC4 97 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 ARPC1BO15143 372 aaKnown RBP13.47□□□□□ -0.25
HDAC6-220ENST00000477528 SMAD9O15198 467 aaKnown RBP13.47□□□□□ -0.25
HDAC6-220ENST00000477528 MAKP20794 623 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 CAPZBP47756 277 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 ARPC4P59998 168 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 AGERQ15109 404 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 P2RY14Q15391 338 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 VASNQ6EMK4 673 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 ZNF511Q8NB15 262 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 OR4M1Q8NGD0 313 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 UCN3Q969E3 161 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 Q96M85 177 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 SNX18Q96RF0 628 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 NRTNQ99748 197 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 C13orf42A0A1B0GVH6 325 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 RFPL3O75679 317 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 SCGNO76038 276 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 AMY2AP04746 511 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 HOXB3P14651 431 aaPredicted RBP13.47□□□□□ -0.25
HDAC6-220ENST00000477528 ELAVL1Q15717 326 aaKnown RBP13.47□□□□□ -0.25
HDAC6-220ENST00000477528 GXYLT1Q4G148 440 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 ZNF425Q6IV72 752 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 CCDC190Q86UF4 302 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 FTMTQ8N4E7 242 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 DUSP19Q8WTR2 217 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 NOX4Q9NPH5 578 aa13.47□□□□□ -0.25
HDAC6-220ENST00000477528 ZNF638Q14966 1978 aaKnown RBP13.46□□□□□ -0.25
HDAC6-220ENST00000477528 TRBV11-1A0A0K0K1C0 115 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 SPTY2D1-AS1A0A0U1RR47 76 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 OTOL1A6NHN0 477 aaPredicted RBP13.46□□□□□ -0.25
HDAC6-220ENST00000477528 ZFAND5O76080 213 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 TRAPPC2P0DI81 140 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 TRAPPC2BP0DI82 140 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 AFF3P51826 1226 aaKnown RBP13.46□□□□□ -0.25
HDAC6-220ENST00000477528 MPEG1Q2M385 716 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 EEF1A1P5Q5VTE0 462 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 LYPD4Q6UWN0 246 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 VN1R4Q7Z5H5 301 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 UBE3DQ7Z6J8 389 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 MFSD4AQ8N468 514 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 OR2A5Q96R48 311 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 GABRG3Q99928 467 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 POU2F3Q9UKI9 436 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 CAMK2AQ9UQM7 478 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 C14orf166Q9Y224 244 aaKnown RBP13.46□□□□□ -0.25
HDAC6-220ENST00000477528 RCE1Q9Y256 329 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 A0A1W2PPV9 198 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 CTSVO60911 334 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 IFNA21P01568 189 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 GABRG2P18507 467 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 LTBQ06643 244 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 FAM53BQ14153 422 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 OR5M10Q6IEU7 315 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 OR7E24Q6IFN5 339 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 DPY19L4Q7Z388 723 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 RCBTB1Q8NDN9 531 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 OR5B2Q96R09 309 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 GON7Q9BXV9 100 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 STRADBQ9C0K7 418 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 PCDHB16Q9NRJ7 776 aa13.46□□□□□ -0.25
HDAC6-220ENST00000477528 YBX2Q9Y2T7 364 aaKnown RBP13.46□□□□□ -0.25
HDAC6-220ENST00000477528 ZNF593O00488 134 aaPredicted RBP13.46□□□□□ -0.26
HDAC6-220ENST00000477528 SELENOFO60613 162 aa13.46□□□□□ -0.26
HDAC6-220ENST00000477528 PRKXP51817 358 aa13.46□□□□□ -0.26
HDAC6-220ENST00000477528 TCEAL6Q6IPX3 200 aa13.46□□□□□ -0.26
HDAC6-220ENST00000477528 UBQLNLQ8IYU4 475 aa13.46□□□□□ -0.26
HDAC6-220ENST00000477528 OR56B4Q8NH76 319 aa13.46□□□□□ -0.26
HDAC6-220ENST00000477528 TMEM185BQ9H7F4 350 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms