RNA–Protein interactions for RNA: ENST00000476625.5

HDAC6-219, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-219ENST00000476625 MDP1Q86V88 176 aa10.33□□□□□ -0.76
HDAC6-219ENST00000476625 LRP11Q86VZ4 500 aa10.33□□□□□ -0.76
HDAC6-219ENST00000476625 IFT20Q8IY31 132 aa10.33□□□□□ -0.76
HDAC6-219ENST00000476625 ZNF786Q8N393 782 aa10.33□□□□□ -0.76
HDAC6-219ENST00000476625 CADM2Q8N3J6 435 aa10.33□□□□□ -0.76
HDAC6-219ENST00000476625 POMGNT2Q8NAT1 580 aa10.33□□□□□ -0.76
HDAC6-219ENST00000476625 UBASH3BQ8TF42 649 aa10.33□□□□□ -0.76
HDAC6-219ENST00000476625 WDR60Q8WVS4 1066 aa10.33□□□□□ -0.76
HDAC6-219ENST00000476625 CKAP2Q8WWK9 683 aa10.33□□□□□ -0.76
HDAC6-219ENST00000476625 YIPF5Q969M3 257 aa10.33□□□□□ -0.76
HDAC6-219ENST00000476625 ZBTB9Q96C00 473 aa10.33□□□□□ -0.76
HDAC6-219ENST00000476625 MS4A3Q96HJ5 214 aa10.33□□□□□ -0.76
HDAC6-219ENST00000476625 TEX37Q96LM6 180 aa10.33□□□□□ -0.76
HDAC6-219ENST00000476625 PRPF18Q99633 342 aaKnown RBP10.33□□□□□ -0.76
HDAC6-219ENST00000476625 MRPL37Q9BZE1 423 aaKnown RBP10.33□□□□□ -0.76
HDAC6-219ENST00000476625 RAB1BQ9H0U4 201 aa10.33□□□□□ -0.76
HDAC6-219ENST00000476625 DYNLRB1Q9NP97 96 aa10.33□□□□□ -0.76
HDAC6-219ENST00000476625 MYOZ1Q9NP98 299 aaPredicted RBP10.33□□□□□ -0.76
HDAC6-219ENST00000476625 MARCOQ9UEW3 520 aaPredicted RBP10.33□□□□□ -0.76
HDAC6-219ENST00000476625 METRNQ9UJH8 293 aa10.33□□□□□ -0.76
HDAC6-219ENST00000476625 ARPC4-TTLL3A0A0A6YYG9 625 aa10.32□□□□□ -0.76
HDAC6-219ENST00000476625 AGAP5A6NIR3 686 aa10.32□□□□□ -0.76
HDAC6-219ENST00000476625 TMEM229AB2RXF0 380 aa10.32□□□□□ -0.76
HDAC6-219ENST00000476625 RNASET2O00584 256 aaKnown RBP10.32□□□□□ -0.76
HDAC6-219ENST00000476625 EIF1BO60739 113 aaKnown RBP10.32□□□□□ -0.76
HDAC6-219ENST00000476625 RPS4Y1P22090 263 aaKnown RBP10.32□□□□□ -0.76
HDAC6-219ENST00000476625 UQCRC2P22695 453 aa10.32□□□□□ -0.76
HDAC6-219ENST00000476625 CHI3L1P36222 383 aaPredicted RBP10.32□□□□□ -0.76
HDAC6-219ENST00000476625 SLC1A3P43003 542 aa10.32□□□□□ -0.76
HDAC6-219ENST00000476625 CLK1P49759 484 aaKnown RBP10.32□□□□□ -0.76
HDAC6-219ENST00000476625 DVL1P1P54792 670 aaPredicted RBP10.32□□□□□ -0.76
HDAC6-219ENST00000476625 CLDN17P56750 224 aa10.32□□□□□ -0.76
HDAC6-219ENST00000476625 HOXC5Q00444 222 aa10.32□□□□□ -0.76
HDAC6-219ENST00000476625 ALKBH6Q3KRA9 238 aa10.32□□□□□ -0.76
HDAC6-219ENST00000476625 RPS26P11Q5JNZ5 115 aaPredicted RBP10.32□□□□□ -0.76
HDAC6-219ENST00000476625 BHLHB9Q6PI77 547 aa10.32□□□□□ -0.76
HDAC6-219ENST00000476625 TCP10LQ8TDR4 215 aa10.32□□□□□ -0.76
HDAC6-219ENST00000476625 NEURL3Q96EH8 262 aa10.32□□□□□ -0.76
HDAC6-219ENST00000476625 SYT3Q9BQG1 590 aa10.32□□□□□ -0.76
HDAC6-219ENST00000476625 C20orf27Q9GZN8 174 aa10.32□□□□□ -0.76
HDAC6-219ENST00000476625 AKTIPQ9H8T0 292 aa10.32□□□□□ -0.76
HDAC6-219ENST00000476625 SLC6A13Q9NSD5 602 aa10.32□□□□□ -0.76
HDAC6-219ENST00000476625 TREM2Q9NZC2 230 aa10.32□□□□□ -0.76
HDAC6-219ENST00000476625 LOC105371242A0A075B767 164 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 WDR91A4D1P6 747 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 CFAP73A6NFT4 308 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 NCR1O76036 304 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 PDE5AO76074 875 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 SNUPNO95149 360 aaKnown RBP10.31□□□□□ -0.76
HDAC6-219ENST00000476625 IGKV3-15P01624 115 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 GPIP06744 558 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 CBLP22681 906 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 RBMXP38159 391 aaKnown RBP10.31□□□□□ -0.76
HDAC6-219ENST00000476625 ACAA2P42765 397 aaKnown RBP10.31□□□□□ -0.76
HDAC6-219ENST00000476625 ALDH3B1P43353 468 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 HTR3AP46098 478 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 EMX2Q04743 252 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 CASP8Q14790 479 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 CHI3L2Q15782 390 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 PRAMEF8Q5VWM4 474 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 PRAMEF7Q5VXH5 474 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 AP1ARQ63HQ0 302 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 ATG16L1Q676U5 607 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 TMEM225Q6GV28 225 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 ZNF771Q7L3S4 317 aaPredicted RBP10.31□□□□□ -0.76
HDAC6-219ENST00000476625 NATD1Q8N6N6 113 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 C3orf56Q8N813 242 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 ZNF781Q8N8C0 355 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 MNS1Q8NEH6 495 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 NUP37Q8NFH4 326 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 HPS1Q92902 700 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 SLC25A36Q96CQ1 311 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 BOD1Q96IK1 185 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 LRRC37BQ96QE4 947 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 SF3B5Q9BWJ5 86 aaKnown RBP10.31□□□□□ -0.76
HDAC6-219ENST00000476625 DPY30Q9C005 99 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 CRLF2Q9HC73 371 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 POLE3Q9NRF9 147 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 HIF1ANQ9NWT6 349 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 NOP53Q9NZM5 478 aaKnown RBP10.31□□□□□ -0.76
HDAC6-219ENST00000476625 MID2Q9UJV3 735 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 CHST2Q9Y4C5 530 aa10.31□□□□□ -0.76
HDAC6-219ENST00000476625 HLA-HP01893 362 aa10.3□□□□□ -0.76
HDAC6-219ENST00000476625 PNMTP11086 282 aa10.3□□□□□ -0.76
HDAC6-219ENST00000476625 ADRA2CP18825 462 aa10.3□□□□□ -0.76
HDAC6-219ENST00000476625 CXCR1P25024 350 aa10.3□□□□□ -0.76
HDAC6-219ENST00000476625 IL12AP29459 219 aa10.3□□□□□ -0.76
HDAC6-219ENST00000476625 RPS5P46782 204 aaKnown RBP10.3□□□□□ -0.76
HDAC6-219ENST00000476625 CAPZA2P47755 286 aa10.3□□□□□ -0.76
HDAC6-219ENST00000476625 HPCAP84074 193 aa10.3□□□□□ -0.76
HDAC6-219ENST00000476625 PIGFQ07326 219 aa10.3□□□□□ -0.76
HDAC6-219ENST00000476625 DAG1Q14118 895 aa10.3□□□□□ -0.76
HDAC6-219ENST00000476625 CEACAM16Q2WEN9 425 aa10.3□□□□□ -0.76
HDAC6-219ENST00000476625 C1orf140Q5VVS0 124 aa10.3□□□□□ -0.76
HDAC6-219ENST00000476625 CARD17Q5XLA6 110 aa10.3□□□□□ -0.76
HDAC6-219ENST00000476625 PEG10Q86TG7 708 aaKnown RBP10.3□□□□□ -0.76
HDAC6-219ENST00000476625 GLCCI1Q86VQ1 547 aa10.3□□□□□ -0.76
HDAC6-219ENST00000476625 CLIP4Q8N3C7 705 aa10.3□□□□□ -0.76
HDAC6-219ENST00000476625 ZNF540Q8NDQ6 660 aa10.3□□□□□ -0.76
HDAC6-219ENST00000476625 OR4F15Q8NGB8 312 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms