RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 KCNJ15Q99712 375 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 PTPRZ1P23471 2315 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-209ENST00000472056 DOT1LQ8TEK3 1739 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 GPR32O75388 356 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 OR4Q2P0C623 313 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 HTR2CP28335 458 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 RPE65Q16518 533 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 RAET1LQ5VY80 246 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 ZFP41Q8N8Y5 198 aa12.44□□□□□ -0.42
COL6A3-209ENST00000472056 PURGQ9UJV8 347 aaKnown RBP12.44□□□□□ -0.42
COL6A3-209ENST00000472056 hCG_1809904A0A1W2PP81 198 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 A0A1W2PPE2 198 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 A0A1W2PR64 198 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 A0A1W2PRV1 198 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 XKRY2A2RUG3 117 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 OR5K3A6NET4 321 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 C5AR1P21730 350 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 MSX1P28360 303 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 DEFB134Q4QY38 66 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 PRRT3Q5FWE3 981 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 RANBP10Q6VN20 620 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 OR1J1Q8NGS3 322 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 CCDC74BQ96LY2 380 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 C8orf33Q9H7E9 229 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-209ENST00000472056 LHX6Q9UPM6 363 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 DOCK5Q9H7D0 1870 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 KLRG2A4D1S0 409 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-209ENST00000472056 MMP7P09237 267 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-209ENST00000472056 RPS19P39019 145 aaKnown RBP12.43□□□□□ -0.42
COL6A3-209ENST00000472056 FLT3LGP49771 235 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 SIX1Q15475 284 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-209ENST00000472056 LETMD1Q6P1Q0 360 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 LAX1Q8IWV1 398 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 OR4C5Q8NGB2 326 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 C4orf47A7E2U8 309 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 GGT5P36269 586 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 SIRPAP78324 504 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 LSMEM2Q8N112 164 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 NENFQ9UMX5 172 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 TRAPPC2LH3BP13 241 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 TFAP2AP05549 437 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 SSTR4P31391 388 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 NSDHLQ15738 373 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 RGMBQ6NW40 437 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 CDHR3Q6ZTQ4 885 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 CCDC74AQ96AQ1 378 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 CMTM3Q96MX0 182 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 SLC46A1Q96NT5 459 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 USP2O75604 605 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-209ENST00000472056 HOXB2P14652 356 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 NFATC4Q14934 902 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 ZNF648Q5T619 568 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-209ENST00000472056 KDM4DQ6B0I6 523 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 MEX3BQ6ZN04 569 aaKnown RBP12.43□□□□□ -0.42
COL6A3-209ENST00000472056 DNAJC5GQ8N7S2 189 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 ZGRF1Q86YA3 2104 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 ANKRD34BA5PLL1 514 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 DPP4P27487 766 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 GCAP28676 217 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 ZNF91Q05481 1191 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 PDE7AQ13946 482 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 STEAP1BQ6NZ63 245 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 ADGRG3Q86Y34 549 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 OR6M1Q8NGM8 313 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 C12orf57Q99622 126 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 SPACA1Q9HBV2 294 aa12.43□□□□□ -0.42
COL6A3-209ENST00000472056 ZNF331Q9NQX6 463 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-209ENST00000472056 DUSP1P28562 367 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 NHSL2Q5HYW2 709 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 ALKAL2Q6UX46 152 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 OR51A2Q8NGJ7 313 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 ZNF566Q969W8 418 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 SLC6A18Q96N87 628 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 SYT17Q9BSW7 474 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 C1orf198Q9H425 327 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 WDR76Q9H967 626 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 INSL5Q9Y5Q6 135 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 ARL16Q0P5N6 197 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 PMPCAQ10713 525 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 PRAMEF19Q5SWL8 479 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 KIRREL1Q96J84 757 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 UBXN10Q96LJ8 280 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 SLC2A8Q9NY64 477 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 B4GALT6Q9UBX8 382 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 ZNF891A8MT65 544 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-209ENST00000472056 CEBPZOSA8MTT3 80 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 CPNE6O95741 557 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 ZP3P21754 424 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 BAMBIQ13145 260 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 CPXM2Q8N436 756 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 SMOQ99835 787 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 INPP5KQ9BT40 448 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 PLEKHA2Q9HB19 425 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 B3GAT1Q9P2W7 334 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 PKD1L3Q7Z443 1732 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 YLPM1P49750 1951 aaKnown RBP12.42□□□□□ -0.42
COL6A3-209ENST00000472056 TMEM72A0PK05 275 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 NUPL2O15504 423 aaKnown RBP12.42□□□□□ -0.42
COL6A3-209ENST00000472056 AGBL4Q5VU57 503 aa12.42□□□□□ -0.42
COL6A3-209ENST00000472056 OR5M8Q8NGP6 311 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms