RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 A4GALTQ9NPC4 353 aa14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 ADAM21Q9UKJ8 722 aa14.51□□□□□ -0.09
CCDC28B-204ENST00000469003 CD5LO43866 347 aa14.5□□□□□ -0.09
CCDC28B-204ENST00000469003 WNT11O96014 354 aa14.5□□□□□ -0.09
CCDC28B-204ENST00000469003 NUDT7P0C024 238 aa14.5□□□□□ -0.09
CCDC28B-204ENST00000469003 HOXB9P17482 250 aaPredicted RBP14.5□□□□□ -0.09
CCDC28B-204ENST00000469003 DSCR9P59020 149 aa14.5□□□□□ -0.09
CCDC28B-204ENST00000469003 STX1BP61266 288 aa14.5□□□□□ -0.09
CCDC28B-204ENST00000469003 SLC2A7Q6PXP3 512 aa14.5□□□□□ -0.09
CCDC28B-204ENST00000469003 CREB3L2Q70SY1 520 aa14.5□□□□□ -0.09
CCDC28B-204ENST00000469003 OR10H5Q8NGA6 315 aa14.5□□□□□ -0.09
CCDC28B-204ENST00000469003 BBS10Q8TAM1 723 aa14.5□□□□□ -0.09
CCDC28B-204ENST00000469003 C7orf26Q96N11 449 aa14.5□□□□□ -0.09
CCDC28B-204ENST00000469003 OBP2BQ9NPH6 170 aa14.5□□□□□ -0.09
CCDC28B-204ENST00000469003 RASD1Q9Y272 281 aa14.5□□□□□ -0.09
CCDC28B-204ENST00000469003 ATP23Q9Y6H3 246 aa14.5□□□□□ -0.09
CCDC28B-204ENST00000469003 MXRA5Q9NR99 2828 aa14.5□□□□□ -0.09
CCDC28B-204ENST00000469003 IGHV4-30-2A0A087WSY4 118 aa14.49□□□□□ -0.09
CCDC28B-204ENST00000469003 FTCDNL1E5RQL4 147 aa14.49□□□□□ -0.09
CCDC28B-204ENST00000469003 H7C417 338 aa14.49□□□□□ -0.09
CCDC28B-204ENST00000469003 TLX2O43763 284 aaPredicted RBP14.49□□□□□ -0.09
CCDC28B-204ENST00000469003 KRT33AO76009 404 aa14.49□□□□□ -0.09
CCDC28B-204ENST00000469003 AHSA1O95433 338 aa14.49□□□□□ -0.09
CCDC28B-204ENST00000469003 CDH2P19022 906 aaPredicted RBP14.49□□□□□ -0.09
CCDC28B-204ENST00000469003 RAB35Q15286 201 aa14.49□□□□□ -0.09
CCDC28B-204ENST00000469003 CLEC2AQ6UVW9 174 aa14.49□□□□□ -0.09
CCDC28B-204ENST00000469003 GOLGA6L1Q8N7Z2 621 aa14.49□□□□□ -0.09
CCDC28B-204ENST00000469003 MFSD8Q8NHS3 518 aa14.49□□□□□ -0.09
CCDC28B-204ENST00000469003 MAL2Q969L2 176 aa14.49□□□□□ -0.09
CCDC28B-204ENST00000469003 TCF7L2Q9NQB0 619 aa14.49□□□□□ -0.09
CCDC28B-204ENST00000469003 TMEM45AQ9NWC5 275 aa14.49□□□□□ -0.09
CCDC28B-204ENST00000469003 ABCA1O95477 2261 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 OR6C65A6NJZ3 312 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 C5orf58C9J3I9 102 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 ZNF587BE7ETH6 402 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 POLR3GO15318 223 aaPredicted RBP14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 TGDSO95455 350 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 ETS2P15036 469 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 PAX7P23759 505 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 APOBEC3AP31941 199 aaPredicted RBP14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 SELENOPP49908 381 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 HOXC5Q00444 222 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 TBRG1Q3YBR2 411 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 HIKESHIQ53FT3 197 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 LRIF1Q5T3J3 769 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 AGBL2Q5U5Z8 902 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 C6orf89Q6UWU4 347 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 EPHX4Q8IUS5 362 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 OR1K1Q8NGR3 316 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 PTDSS2Q9BVG9 487 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 C12orf10Q9HB07 376 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 SLC25A37Q9NYZ2 338 aa14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 ANK3Q12955 4377 aaKnown RBP14.48□□□□□ -0.09
CCDC28B-204ENST00000469003 A0A096LNT2 108 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 ELOA3DA6NLF2 546 aaPredicted RBP14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 ATP6V1G2-DDX39BF2Z307 99 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 FZD7O75084 574 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 LGI1O95970 557 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 ARAFP10398 606 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 PNMTP11086 282 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 BMP4P12644 408 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 PRKAR1BP31321 381 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 EGR4Q05215 589 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 CHRNB3Q05901 458 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 LGALS3BPQ08380 585 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 ELOA3BQ3SY89 546 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 NIPAL3Q6P499 406 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 BLOC1S3Q6QNY0 202 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 FUNDC1Q8IVP5 155 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 MSRB3Q8IXL7 192 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 ELOA3Q8NG57 546 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 SLC25A36Q96CQ1 311 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 ZNF317Q96PQ6 595 aaPredicted RBP14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 ALKBH3Q96Q83 286 aaPredicted RBP14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 CCDC28BQ9BUN5 200 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 LINC00470Q9BZP3 86 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 YAE1D1Q9NRH1 226 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 RPS6KB2Q9UBS0 482 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 MOKQ9UQ07 419 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 PMF1-BGLAPU3KQ54 211 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 ALPK2Q86TB3 2170 aa14.47□□□□□ -0.09
CCDC28B-204ENST00000469003 PPIBP23284 216 aaKnown RBP14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 GTF2E2P29084 291 aaKnown RBP14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 RPS5P46782 204 aaKnown RBP14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 IDH3AP50213 366 aa14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 GCNT6Q5T4J0 391 aa14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 C5orf46Q6UWT4 87 aa14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 LINGO2Q7L985 606 aa14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 ZNF525Q8N782 197 aa14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 LSMEM1Q8N8F7 131 aa14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 NFKBIDQ8NI38 313 aa14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 MAGEE2Q8TD90 523 aaPredicted RBP14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 LRRC8CQ8TDW0 803 aa14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 HTRA1Q92743 480 aa14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 BCL2L2Q92843 193 aaPredicted RBP14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 SPDL1Q96EA4 605 aa14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 KTI12Q96EK9 354 aaPredicted RBP14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 SLC38A2Q96QD8 506 aa14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 RSPO3Q9BXY4 272 aaPredicted RBP14.46□□□□□ -0.09
CCDC28B-204ENST00000469003 SLAMF8Q9P0V8 285 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms