RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 FAM71CQ8NEG0 241 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 TSLPQ969D9 159 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-217ENST00000466159 ABCG5Q9H222 651 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 RPRD1BQ9NQG5 326 aaKnown RBP8.16□□□□□ -1.1
SYNE1-217ENST00000466159 AK6Q9Y3D8 172 aaKnown RBP8.16□□□□□ -1.1
SYNE1-217ENST00000466159 NPFFR2Q9Y5X5 522 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 SPAG17Q6Q759 2223 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 A0A087WV48 116 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 TRAV1-2A0A0B4J238 106 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 FAM172BPA6NC97 362 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 TLCD2A6NGC4 264 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 OR6C70A6NIJ9 312 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 C17orf51A8MQB3 221 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 INMT-MINDY4F8WBC2 141 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 H0YIG0 161 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 SLC43A1O75387 559 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 SERPINA3P01011 423 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 F13BP05160 661 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 UBL4AP11441 157 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 ARSBP15848 533 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 IGFBP4P22692 258 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 AHCYP23526 432 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 CD27P26842 260 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 GRK6P43250 576 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 PRPS1P60891 318 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 LTBQ06643 244 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 SKP2Q13309 424 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 ZNF74Q16587 644 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 Q5BKY6 102 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 TCTE1Q5JU00 501 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 LINC01590Q5TEZ4 76 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 RPL22L1Q6P5R6 122 aaKnown RBP8.16□□□□□ -1.1
SYNE1-217ENST00000466159 PRR23CQ6ZRP0 262 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 KRT74Q7RTS7 529 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 C7orf57Q8NEG2 295 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 DNAJA3Q96EY1 480 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 ADOQ96SZ5 270 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 TMEM246Q9BRR3 403 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 RTN4RQ9BZR6 473 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 GALNT9Q9HCQ5 603 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 BRD7Q9NPI1 651 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 NANSQ9NR45 359 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 DHCR7Q9UBM7 475 aaKnown RBP8.16□□□□□ -1.1
SYNE1-217ENST00000466159 MRPS7Q9Y2R9 242 aaKnown RBP8.16□□□□□ -1.1
SYNE1-217ENST00000466159 PCNX3Q9H6A9 2034 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 CDC14CA4D256 554 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 FITM1A5D6W6 292 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 NOTOA8MTQ0 251 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 METTL12A8MUP2 240 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 SCDO00767 359 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 FLRT2O43155 660 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 ORC5O43913 435 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 ZNF217O75362 1048 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 UTS2O95399 124 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 IL33O95760 270 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 UCHL1P09936 223 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 SLC6A1P30531 599 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 EFNA3P52797 238 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 GRM7Q14831 915 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 COL19A1Q14993 1142 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 TMEM151BQ8IW70 566 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 ZNF440Q8IYI8 595 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 BMPERQ8N8U9 685 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 ZFP3Q96NJ6 502 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 ALG12Q9BV10 488 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 SLC19A3Q9BZV2 496 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 NRSN2Q9GZP1 204 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 UCK1Q9HA47 277 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 MMP25Q9NPA2 562 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 SLC2A4RGQ9NR83 387 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 CUTCQ9NTM9 273 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 MCUBQ9NWR8 336 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 UCKL1Q9NWZ5 548 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 CA14Q9ULX7 337 aa8.16□□□□□ -1.1
SYNE1-217ENST00000466159 DCTN6O00399 190 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 PIN1P1O15428 100 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 ZNF264O43296 627 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 CPNE3O75131 537 aaKnown RBP8.15□□□□□ -1.1
SYNE1-217ENST00000466159 ARL6IP5O75915 188 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 OR2B3O76000 313 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 GLCEO94923 617 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 YES1P07947 543 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 CD3GP09693 182 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 PNMTP11086 282 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 BTCP35070 178 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 ADH7P40394 386 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 PPICP45877 212 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 NANOS3P60323 173 aaKnown RBP8.15□□□□□ -1.1
SYNE1-217ENST00000466159 CTXN1P60606 82 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 SLC36A2Q495M3 483 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 PLA1AQ53H76 456 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 ALG10Q5BKT4 473 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 SLC35D3Q5M8T2 416 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 PYHIN1Q6K0P9 492 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 FAM122BQ7Z309 247 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 C17orf82Q86X59 251 aaPredicted RBP8.15□□□□□ -1.1
SYNE1-217ENST00000466159 SLITRK4Q8IW52 837 aa8.15□□□□□ -1.1
SYNE1-217ENST00000466159 ASCC1Q8N9N2 400 aaKnown RBP8.15□□□□□ -1.1
SYNE1-217ENST00000466159 LRRC75AQ8NAA5 344 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms