RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 TGFBR3Q03167 851 aa20.26■□□□□ 0.83
PTPN4-208ENST00000460289 SWT1Q5T5J6 900 aaKnown RBP20.26■□□□□ 0.83
PTPN4-208ENST00000460289 FAM69AQ5T7M9 428 aa20.26■□□□□ 0.83
PTPN4-208ENST00000460289 REP15Q6BDI9 236 aa20.26■□□□□ 0.83
PTPN4-208ENST00000460289 CREB3L2Q70SY1 520 aa20.26■□□□□ 0.83
PTPN4-208ENST00000460289 SNX32Q86XE0 403 aa20.26■□□□□ 0.83
PTPN4-208ENST00000460289 POMGNT2Q8NAT1 580 aa20.26■□□□□ 0.83
PTPN4-208ENST00000460289 MUS81Q96NY9 551 aa20.26■□□□□ 0.83
PTPN4-208ENST00000460289 ZNF385AQ96PM9 386 aaKnown RBP20.26■□□□□ 0.83
PTPN4-208ENST00000460289 ZNF317Q96PQ6 595 aaPredicted RBP20.26■□□□□ 0.83
PTPN4-208ENST00000460289 EPYCQ99645 322 aa20.26■□□□□ 0.83
PTPN4-208ENST00000460289 ARHGDIGQ99819 225 aa20.26■□□□□ 0.83
PTPN4-208ENST00000460289 SLC7A10Q9NS82 523 aa20.26■□□□□ 0.83
PTPN4-208ENST00000460289 CAPN7Q9Y6W3 813 aa20.26■□□□□ 0.83
PTPN4-208ENST00000460289 TRAV36DV7A0A075B6V5 113 aa20.25■□□□□ 0.83
PTPN4-208ENST00000460289 PDLIM1O00151 329 aa20.25■□□□□ 0.83
PTPN4-208ENST00000460289 HS3ST1O14792 307 aa20.25■□□□□ 0.83
PTPN4-208ENST00000460289 TPST2O60704 377 aa20.25■□□□□ 0.83
PTPN4-208ENST00000460289 OPN1SWP03999 348 aa20.25■□□□□ 0.83
PTPN4-208ENST00000460289 ADAM8P78325 824 aa20.25■□□□□ 0.83
PTPN4-208ENST00000460289 MFSD13AQ14CX5 517 aa20.25■□□□□ 0.83
PTPN4-208ENST00000460289 RABL3Q5HYI8 236 aa20.25■□□□□ 0.83
PTPN4-208ENST00000460289 TSPO2Q5TGU0 170 aa20.25■□□□□ 0.83
PTPN4-208ENST00000460289 ADAM5Q6NVV9 412 aa20.25■□□□□ 0.83
PTPN4-208ENST00000460289 ABHD12BQ7Z5M8 362 aaPredicted RBP20.25■□□□□ 0.83
PTPN4-208ENST00000460289 LRRC75A-AS1Q8N1F1 130 aa20.25■□□□□ 0.83
PTPN4-208ENST00000460289 ZNF611Q8N823 705 aa20.25■□□□□ 0.83
PTPN4-208ENST00000460289 TAAR8Q969N4 342 aa20.25■□□□□ 0.83
PTPN4-208ENST00000460289 MCHR1Q99705 422 aa20.25■□□□□ 0.83
PTPN4-208ENST00000460289 WFDC6Q9BQY6 131 aa20.25■□□□□ 0.83
PTPN4-208ENST00000460289 TMUB1Q9BVT8 246 aa20.25■□□□□ 0.83
PTPN4-208ENST00000460289 SLCO5A1Q9H2Y9 848 aa20.25■□□□□ 0.83
PTPN4-208ENST00000460289 OR6C65A6NJZ3 312 aa20.24■□□□□ 0.83
PTPN4-208ENST00000460289 FXYD1O00168 92 aa20.24■□□□□ 0.83
PTPN4-208ENST00000460289 CLOCKO15516 846 aa20.24■□□□□ 0.83
PTPN4-208ENST00000460289 ARHGEF9O43307 516 aa20.24■□□□□ 0.83
PTPN4-208ENST00000460289 FZD7O75084 574 aa20.24■□□□□ 0.83
PTPN4-208ENST00000460289 ITGA5P08648 1049 aa20.24■□□□□ 0.83
PTPN4-208ENST00000460289 NKX6-1P78426 367 aaPredicted RBP20.24■□□□□ 0.83
PTPN4-208ENST00000460289 GABRA6Q16445 453 aa20.24■□□□□ 0.83
PTPN4-208ENST00000460289 NRF1Q16656 503 aa20.24■□□□□ 0.83
PTPN4-208ENST00000460289 C1QTNF12Q5T7M4 302 aa20.24■□□□□ 0.83
PTPN4-208ENST00000460289 ZNF613Q6PF04 617 aa20.24■□□□□ 0.83
PTPN4-208ENST00000460289 SEZ6L2Q6UXD5 910 aa20.24■□□□□ 0.83
PTPN4-208ENST00000460289 CCDC80Q76M96 950 aa20.24■□□□□ 0.83
PTPN4-208ENST00000460289 OR6S1Q8NH40 331 aa20.24■□□□□ 0.83
PTPN4-208ENST00000460289 C10orf82Q8WW14 230 aa20.24■□□□□ 0.83
PTPN4-208ENST00000460289 AKAP1Q92667 903 aaKnown RBP eCLIP20.24■□□□□ 0.83
PTPN4-208ENST00000460289 B3GALT5Q9Y2C3 310 aa20.24■□□□□ 0.83
PTPN4-208ENST00000460289 IGKV1D-42A0A075B6H8 117 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 DPRXA6NFQ7 191 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 AIM2O14862 343 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 CCDC22O60826 627 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 TMCC2O75069 709 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 KRT33AO76009 404 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 ZNF43P17038 809 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 MPGP29372 298 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 HOXC12P31275 282 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 CDH12P55289 794 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 BSPH1Q075Z2 132 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 VEZF1Q14119 521 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 PRR14LQ5THK1 2151 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 SHEQ5VZ18 495 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 ERICH5Q6P6B1 374 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 H1FNTQ75WM6 255 aaPredicted RBP20.23■□□□□ 0.83
PTPN4-208ENST00000460289 CALHM3Q86XJ0 350 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 EPHX4Q8IUS5 362 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 P3H2Q8IVL5 708 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 C1orf162Q8NEQ5 155 aaPredicted RBP20.23■□□□□ 0.83
PTPN4-208ENST00000460289 GPR32P1Q8NGA4 272 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 RP9Q8TA86 221 aaKnown RBP20.23■□□□□ 0.83
PTPN4-208ENST00000460289 TAMM41Q96BW9 452 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 OXGR1Q96P68 337 aa20.23■□□□□ 0.83
PTPN4-208ENST00000460289 MED13LQ71F56 2210 aa20.22■□□□□ 0.83
PTPN4-208ENST00000460289 M0R3H8 397 aa20.22■□□□□ 0.83
PTPN4-208ENST00000460289 FOXG1P55316 489 aaPredicted RBP20.22■□□□□ 0.83
PTPN4-208ENST00000460289 KLHL17Q6TDP4 642 aa20.22■□□□□ 0.83
PTPN4-208ENST00000460289 C17orf78Q8N4C9 275 aa20.22■□□□□ 0.83
PTPN4-208ENST00000460289 OR6T1Q8NGN1 323 aa20.22■□□□□ 0.83
PTPN4-208ENST00000460289 OR52N5Q8NH56 324 aa20.22■□□□□ 0.83
PTPN4-208ENST00000460289 TMEM171Q8WVE6 324 aa20.22■□□□□ 0.83
PTPN4-208ENST00000460289 TMEM43Q9BTV4 400 aa20.22■□□□□ 0.83
PTPN4-208ENST00000460289 AMBRA1Q9C0C7 1298 aa20.22■□□□□ 0.83
PTPN4-208ENST00000460289 ARMCX1Q9P291 453 aa20.22■□□□□ 0.83
PTPN4-208ENST00000460289 CORINQ9Y5Q5 1042 aa20.22■□□□□ 0.83
PTPN4-208ENST00000460289 SLC25A15Q9Y619 301 aa20.22■□□□□ 0.83
PTPN4-208ENST00000460289 ROS1P08922 2347 aa20.21■□□□□ 0.83
PTPN4-208ENST00000460289 M0R082 166 aa20.21■□□□□ 0.83
PTPN4-208ENST00000460289 IFNA14P01570 189 aa20.21■□□□□ 0.83
PTPN4-208ENST00000460289 CD247P20963 164 aa20.21■□□□□ 0.83
PTPN4-208ENST00000460289 GRPRP30550 384 aa20.21■□□□□ 0.83
PTPN4-208ENST00000460289 C1DQ13901 141 aaKnown RBP20.21■□□□□ 0.83
PTPN4-208ENST00000460289 ENTPD8Q5MY95 495 aa20.21■□□□□ 0.83
PTPN4-208ENST00000460289 C9orf135Q5VTT2 229 aa20.21■□□□□ 0.83
PTPN4-208ENST00000460289 NIPAL3Q6P499 406 aa20.21■□□□□ 0.83
PTPN4-208ENST00000460289 TMEM108Q6UXF1 575 aa20.21■□□□□ 0.83
PTPN4-208ENST00000460289 KDM8Q8N371 416 aa20.21■□□□□ 0.83
PTPN4-208ENST00000460289 LILRB1Q8NHL6 650 aaPredicted RBP20.21■□□□□ 0.83
PTPN4-208ENST00000460289 ZNF417Q8TAU3 575 aa20.21■□□□□ 0.83
PTPN4-208ENST00000460289 FBXW5Q969U6 566 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms