RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 GABRB1P18505 474 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 MATN1P21941 496 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 UQCRC2P22695 453 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 KDELR2P33947 212 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 SOAT1P35610 550 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 KLF3P57682 345 aaPredicted RBP4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 SEC61GP60059 68 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 SNRPEP62304 92 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 PPIAP62937 165 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 ADAM8P78325 824 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 FAM3AP98173 230 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 TFAMQ00059 246 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 AESQ08117 197 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 RPE65Q16518 533 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 ZNF239Q16600 458 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 SMIM21Q3B7S5 101 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 SPOUT1Q5T280 376 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 KIAA0930Q6ICG6 404 aaPredicted RBP4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 UNQ9370/PRO34162Q6UXP9 181 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 TTLL10Q6ZVT0 673 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC16A9Q7RTY1 509 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 PAQR7Q86WK9 346 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 TMEM139Q8IV31 216 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 AQP11Q8NBQ7 271 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 OR2M7Q8NG81 312 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 OR5D13Q8NGL4 314 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 ABHD4Q8TB40 342 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 UBTD2Q8WUN7 234 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 ZBTB8AQ96BR9 441 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 LINC00052Q96N35 136 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 RBBP8Q99708 897 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 CMSS1Q9BQ75 279 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 AIF1LQ9BQI0 150 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 ZNF426Q9BUY5 554 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 SDCBP2Q9H190 292 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 ROPN1Q9HAT0 212 aaPredicted RBP4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 APMAPQ9HDC9 416 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 HRASLSQ9HDD0 168 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 PXMP2Q9NR77 195 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 AGPAT4Q9NRZ5 378 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 CYSLTR2Q9NS75 346 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 TMEM9Q9P0T7 183 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 STOX2Q9P2F5 926 aaPredicted RBP4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 METTL1Q9UBP6 276 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 CNOT8Q9UFF9 292 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 SCP2D1Q9UJQ7 156 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 SERTAD3Q9UJW9 196 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 GNG8Q9UK08 70 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 FBXL4Q9UKA2 621 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 COLEC10Q9Y6Z7 277 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 ASTN1O14525 1302 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 PIEZO1Q92508 2521 aa4.39□□□□□ -1.71
CCDC88A-209ENST00000456975 LOC105369274A0A096LPK9 316 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 LOC102723532A0A0G2JNH3 316 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 A0A1W2PRX2 142 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SAGE2PA6NJ88 616 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 PROB1E7EW31 1015 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 GOSR2O14653 212 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SELENOFO60613 162 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 RAD1O60671 282 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 RP2O75695 350 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SCELO95171 688 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 VAPBO95292 243 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 ACTL6AO96019 429 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 RPLP0P05388 317 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 JUNP05412 331 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 RHOP08100 348 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 HAPLN1P10915 354 aaPredicted RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 G6PDP11413 515 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 CYBAP13498 195 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 TPSB2P20231 275 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 ANOS1P23352 680 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 ELAVL4P26378 380 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 METAP2P50579 478 aaKnown RBP eCLIP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 ARPP19P56211 112 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC37A1P57057 533 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 MC2RQ01718 297 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 MZT1Q08AG7 82 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 ZNF616Q08AN1 781 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 BST2Q10589 180 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SF3A2Q15428 464 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 TPSAB1Q15661 275 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SIRPB2Q5JXA9 342 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC22A10Q63ZE4 541 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 TAPT1Q6NXT6 567 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC39A4Q6P5W5 647 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC23A3Q6PIS1 610 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 CMTM4Q8IZR5 234 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 OR4N4Q8N0Y3 316 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SIRT6Q8N6T7 355 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 TMEM161BQ8NDZ6 487 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 PXT1Q8NFP0 134 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 OR51D1Q8NGF3 324 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC2A12Q8TD20 617 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 TCTEX1D2Q8WW35 142 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 ST6GALNAC6Q969X2 333 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 ESAMQ96AP7 390 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 FKBP10Q96AY3 582 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 CMTM7Q96FZ5 175 aa4.38□□□□□ -1.71
CCDC88A-209ENST00000456975 PRR11Q96HE9 360 aaPredicted RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms