RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 GK3PQ14409 553 aa16.06■□□□□ 0.16
SQSTM1-204ENST00000453046 TRIP10Q15642 601 aa16.06■□□□□ 0.16
SQSTM1-204ENST00000453046 NDUFAF6Q330K2 333 aa16.06■□□□□ 0.16
SQSTM1-204ENST00000453046 OR2T5Q6IEZ7 315 aa16.06■□□□□ 0.16
SQSTM1-204ENST00000453046 CYP4Z1Q86W10 505 aa16.06■□□□□ 0.16
SQSTM1-204ENST00000453046 OR2T29Q8NH02 315 aa16.06■□□□□ 0.16
SQSTM1-204ENST00000453046 ROBO4Q8WZ75 1007 aa16.06■□□□□ 0.16
SQSTM1-204ENST00000453046 AMBRA1Q9C0C7 1298 aa16.06■□□□□ 0.16
SQSTM1-204ENST00000453046 VCX3BQ9H321 246 aa16.06■□□□□ 0.16
SQSTM1-204ENST00000453046 FAM32AQ9Y421 112 aaKnown RBP16.06■□□□□ 0.16
SQSTM1-204ENST00000453046 ZNF264O43296 627 aa16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 EIF4E2O60573 245 aaKnown RBP16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 UBL4AP11441 157 aa16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 CBFBQ13951 182 aa16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 TOMM34Q15785 309 aaPredicted RBP16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 TMEM176BQ3YBM2 270 aaPredicted RBP16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 BEND4Q6ZU67 534 aa16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 TSEN54Q7Z6J9 526 aaKnown RBP16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 AMIGO2Q86SJ2 522 aa16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 CLIP4Q8N3C7 705 aa16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 FAM71CQ8NEG0 241 aa16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 OR4D11Q8NGI4 311 aa16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 OR5W2Q8NH69 310 aa16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 VANGL1Q8TAA9 524 aaPredicted RBP16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 GPR119Q8TDV5 335 aa16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 CPNE4Q96A23 557 aaPredicted RBP16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 PRRC1Q96M27 445 aa16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 PIP5K1AQ99755 562 aa16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 POLR2J2Q9GZM3 115 aaKnown RBP16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 POLR2J3Q9H1A7 115 aaKnown RBP16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 C12orf49Q9H741 205 aa16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 TESQ9UGI8 421 aaKnown RBP16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 ZFHX3Q15911 3703 aa16.05■□□□□ 0.16
SQSTM1-204ENST00000453046 CLDN24A6NM45 220 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 DEFB108AA8MXU0 73 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 FMO6PO60774 539 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 PRKCAP17252 672 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 CD53P19397 219 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 PEX2P28328 305 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 SHC1P29353 583 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 PTDSS1P48651 473 aaKnown RBP16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 ADAM8P78325 824 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 PLAURQ03405 335 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 FOXD4Q12950 439 aaPredicted RBP16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 ZNF239Q16600 458 aaKnown RBP16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 TMEM201Q5SNT2 666 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 OGFRL1Q5TC84 451 aaPredicted RBP16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 DEF8Q6ZN54 512 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 RANBP3LQ86VV4 465 aaPredicted RBP16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 ZNF440Q8IYI8 595 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 SVOPLQ8N434 492 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 OR6T1Q8NGN1 323 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 MRGPRX4Q96LA9 322 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 SEMA6AQ9H2E6 1030 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 REEP1Q9H902 201 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 EXOSC3Q9NQT5 275 aaKnown RBP16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 C8orf4Q9NR00 106 aa16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 BEX4Q9NWD9 120 aaPredicted RBP16.04■□□□□ 0.16
SQSTM1-204ENST00000453046 GNGT2O14610 69 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 AP3D1O14617 1153 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 SIAH2O43255 324 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 EFNA2O43921 213 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 CSTAP01040 98 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 PPP3CBP16298 524 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 AGTR1P30556 359 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 SELENBP1Q13228 472 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 QPRTQ15274 297 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 RNPS1Q15287 305 aaKnown RBP16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 NPTX1Q15818 432 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 OFCC1Q8IZS5 231 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 ICA1LQ8NDH6 482 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 ABHD3Q8WU67 409 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 DHRS1Q96LJ7 313 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 EPYCQ99645 322 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 SRXN1Q9BYN0 137 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 UBTD1Q9HAC8 227 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 NTN4Q9HB63 628 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 RLIMQ9NVW2 624 aa16.03■□□□□ 0.16
SQSTM1-204ENST00000453046 ZNF469Q96JG9 3925 aaPredicted RBP16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 E2F6O75461 281 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 DIRAS1O95057 198 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 FPR1P21462 350 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 RRM2P31350 389 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 IFNA8P32881 189 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 VHLP40337 213 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 SPIBQ01892 262 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 STAC2Q6ZMT1 411 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 FCRLAQ7L513 359 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 EPHX4Q8IUS5 362 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 RNF128Q8TEB7 428 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 NRG4Q8WWG1 115 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 CNOT9Q92600 299 aaKnown RBP16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 EME1Q96AY2 570 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 ARSGQ96EG1 525 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 WFDC6Q9BQY6 131 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 C9orf16Q9BUW7 83 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 LAT2Q9GZY6 243 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 VCXQ9H320 206 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 OAZ3Q9UMX2 235 aa16.02■□□□□ 0.16
SQSTM1-204ENST00000453046 SAMHD1Q9Y3Z3 626 aaKnown RBP16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms