RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 ZNF385AQ96PM9 386 aaKnown RBP11.32□□□□□ -0.6
CHD3-206ENST00000452447 TRAF4Q9BUZ4 470 aaPredicted RBP11.32□□□□□ -0.6
CHD3-206ENST00000452447 AMBRA1Q9C0C7 1298 aa11.32□□□□□ -0.6
CHD3-206ENST00000452447 GRIP2Q9C0E4 1043 aa11.32□□□□□ -0.6
CHD3-206ENST00000452447 RABEP2Q9H5N1 569 aa11.32□□□□□ -0.6
CHD3-206ENST00000452447 VAPAQ9P0L0 249 aa11.32□□□□□ -0.6
CHD3-206ENST00000452447 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.32□□□□□ -0.6
CHD3-206ENST00000452447 RASD1Q9Y272 281 aa11.32□□□□□ -0.6
CHD3-206ENST00000452447 AMDHD2Q9Y303 409 aa11.32□□□□□ -0.6
CHD3-206ENST00000452447 HMGB1P1B2RPK0 211 aaPredicted RBP11.31□□□□□ -0.6
CHD3-206ENST00000452447 TMEM229AB2RXF0 380 aa11.31□□□□□ -0.6
CHD3-206ENST00000452447 NPIPB7O75200 414 aa11.31□□□□□ -0.6
CHD3-206ENST00000452447 WNT11O96014 354 aa11.31□□□□□ -0.6
CHD3-206ENST00000452447 ARAFP10398 606 aa11.31□□□□□ -0.6
CHD3-206ENST00000452447 RPS5P46782 204 aaKnown RBP11.31□□□□□ -0.6
CHD3-206ENST00000452447 ATP4BP51164 291 aa11.31□□□□□ -0.6
CHD3-206ENST00000452447 PRPS1P60891 318 aa11.31□□□□□ -0.6
CHD3-206ENST00000452447 SQLEQ14534 574 aa11.31□□□□□ -0.6
CHD3-206ENST00000452447 C1QTNF12Q5T7M4 302 aa11.31□□□□□ -0.6
CHD3-206ENST00000452447 DTX2Q86UW9 622 aa11.31□□□□□ -0.6
CHD3-206ENST00000452447 MSRB3Q8IXL7 192 aa11.31□□□□□ -0.6
CHD3-206ENST00000452447 ZIC4Q8N9L1 334 aa11.31□□□□□ -0.6
CHD3-206ENST00000452447 MFSD8Q8NHS3 518 aa11.31□□□□□ -0.6
CHD3-206ENST00000452447 SLC17A5Q9NRA2 495 aa11.31□□□□□ -0.6
CHD3-206ENST00000452447 OR6C65A6NJZ3 312 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 E7EQL1 145 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 CD8AP01732 235 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 PTNP21246 168 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 SLC6A2P23975 617 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 PCSK6P29122 969 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 TTKP33981 857 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 NCALDP61601 193 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 PPP2R2BQ00005 443 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 SPOCK1Q08629 439 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 NRF1Q16656 503 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 NIPAL3Q6P499 406 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 CREB3L2Q70SY1 520 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 FBXL14Q8N1E6 418 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 LSMEM1Q8N8F7 131 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 WDR31Q8NA23 367 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 DNAJA4Q8WW22 397 aaPredicted RBP11.3□□□□□ -0.6
CHD3-206ENST00000452447 ZNF607Q96SK3 696 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 DHRS9Q9BPW9 319 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 FKRPQ9H9S5 495 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 C12orf10Q9HB07 376 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 BARX1Q9HBU1 254 aaPredicted RBP11.3□□□□□ -0.6
CHD3-206ENST00000452447 SELENONQ9NZV5 590 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 SLC13A4Q9UKG4 626 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 ARFGEF3Q5TH69 2177 aa11.3□□□□□ -0.6
CHD3-206ENST00000452447 ANK3Q12955 4377 aaKnown RBP11.3□□□□□ -0.6
CHD3-206ENST00000452447 PRORSD1PA6NEY8 169 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 RNF223E7ERA6 249 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 ZNF587BE7ETH6 402 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 OR2T1O43869 369 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 SERPINB7O75635 380 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 PNMTP11086 282 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 ZNF43P17038 809 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 GPX2P18283 190 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 ACVR1BP36896 505 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 SELENOPP49908 381 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 P2RY4P51582 365 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 EGR4Q05215 589 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 SCARB2Q14108 478 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 ALG10BQ5I7T1 473 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 DHRS4L2Q6PKH6 230 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 C5orf46Q6UWT4 87 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 EPHX4Q8IUS5 362 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 C10orf111Q8N326 155 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 KDM8Q8N371 416 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 MUC15Q8N387 334 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 BHLHE22Q8NFJ8 381 aaPredicted RBP11.29□□□□□ -0.6
CHD3-206ENST00000452447 RNF217Q8TC41 542 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 KTI12Q96EK9 354 aaPredicted RBP11.29□□□□□ -0.6
CHD3-206ENST00000452447 MAGEB18Q96M61 343 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 ADAD1Q96M93 576 aaKnown RBP11.29□□□□□ -0.6
CHD3-206ENST00000452447 TMEM38AQ9H6F2 299 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 SLC52A3Q9NQ40 469 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 CBLN4Q9NTU7 201 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 GDF2Q9UK05 429 aaPredicted RBP11.29□□□□□ -0.6
CHD3-206ENST00000452447 TRIM33Q9UPN9 1127 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 B3GALT5Q9Y2C3 310 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 GMEB1Q9Y692 573 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 ATP23Q9Y6H3 246 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 CR1P17927 2039 aa11.29□□□□□ -0.6
CHD3-206ENST00000452447 TRBV5-3A0A0A0MS03 114 aa11.28□□□□□ -0.6
CHD3-206ENST00000452447 A0A1B0GWA3 101 aa11.28□□□□□ -0.6
CHD3-206ENST00000452447 FTCDNL1E5RQL4 147 aa11.28□□□□□ -0.6
CHD3-206ENST00000452447 NDUFS7O75251 213 aa11.28□□□□□ -0.6
CHD3-206ENST00000452447 IGHV4-39P01824 125 aa11.28□□□□□ -0.6
CHD3-206ENST00000452447 BMP4P12644 408 aa11.28□□□□□ -0.6
CHD3-206ENST00000452447 AQP1P29972 269 aa11.28□□□□□ -0.6
CHD3-206ENST00000452447 FABP6P51161 128 aa11.28□□□□□ -0.6
CHD3-206ENST00000452447 RGS8P57771 180 aaPredicted RBP11.28□□□□□ -0.6
CHD3-206ENST00000452447 HIKESHIQ53FT3 197 aa11.28□□□□□ -0.6
CHD3-206ENST00000452447 FAM69AQ5T7M9 428 aa11.28□□□□□ -0.6
CHD3-206ENST00000452447 ZNF544Q6NX49 715 aa11.28□□□□□ -0.6
CHD3-206ENST00000452447 ULK3Q6PHR2 472 aa11.28□□□□□ -0.6
CHD3-206ENST00000452447 C6orf89Q6UWU4 347 aa11.28□□□□□ -0.6
CHD3-206ENST00000452447 CKAP2Q8WWK9 683 aa11.28□□□□□ -0.6
CHD3-206ENST00000452447 SLC38A4Q969I6 547 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms