RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 OR10V1Q8NGI7 309 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 PNPT1Q8TCS8 783 aaKnown RBP3.5□□□□□ -1.85
VPS29-202ENST00000447578 AGR3Q8TD06 166 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 KCTD4Q8WVF5 259 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 RLN3Q8WXF3 142 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 DNAJC9Q8WXX5 260 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 PNPLA2Q96AD5 504 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 ELMO2Q96JJ3 720 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 CNDP1Q96KN2 507 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 PPP1R36Q96LQ0 422 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 FAM218AQ96MZ4 157 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 ANKRD27Q96NW4 1050 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 SORT1Q99523 831 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 PKMYT1Q99640 499 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 TBL1YQ9BQ87 522 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 TBCDQ9BTW9 1192 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 KIFC1Q9BW19 673 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 GSDMCQ9BYG8 508 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 HOXD1Q9GZZ0 328 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 RHOJQ9H4E5 214 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 CALHM2Q9HA72 323 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 PLEKHA3Q9HB20 300 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 NMRAL1Q9HBL8 299 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 LPAR2Q9HBW0 351 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 TRPV5Q9NQA5 729 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 ZNF71Q9NQZ8 489 aaPredicted RBP3.5□□□□□ -1.85
VPS29-202ENST00000447578 ABCC13Q9NSE7 274 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 RBM22Q9NW64 420 aaKnown RBP eCLIP3.5□□□□□ -1.852e-8■□□□□ 9.5
VPS29-202ENST00000447578 NMRK1Q9NWW6 199 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 ANGPTL2Q9UKU9 493 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 TCF19Q9Y242 345 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 MAB21L2Q9Y586 359 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 SBF1O95248 1867 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 RALGAPA2Q2PPJ7 1873 aa3.5□□□□□ -1.85
VPS29-202ENST00000447578 ZNF236Q9UL36 1845 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 GOLGA8QA0A0J9YX86 632 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 LOC100653049A0A140TA62 436 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 GOLGA8OA6NCC3 632 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 A8MU76 341 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 E9PAM4 449 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 E9PBE3 544 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 NEDD8-MDP1E9PL57 170 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 GOLGA8NF8WBI6 632 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 H0YL77 283 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 H3BMH7 237 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 INPP4BO15327 924 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 PCDH7O60245 1069 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 CACNG3O60359 315 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 KLHL41O60662 606 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 SDC3O75056 442 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 KHDRBS3O75525 346 aaKnown RBP3.49□□□□□ -1.85
VPS29-202ENST00000447578 MTRF1O75570 445 aaKnown RBP3.49□□□□□ -1.85
VPS29-202ENST00000447578 ZMPSTE24O75844 475 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 CABYRO75952 493 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 KRT34O76011 436 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 PDE5AO76074 875 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 NXPH2O95156 264 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 VAPBO95292 243 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 IGLV3-25P01717 112 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 ASGR1P07306 291 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 UQCRBP14927 111 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 ACADSP16219 412 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 PAX7P23759 505 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 MAT2AP31153 395 aaKnown RBP3.49□□□□□ -1.85
VPS29-202ENST00000447578 GCKP35557 465 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 VHLP40337 213 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 TSFMP43897 325 aaKnown RBP3.49□□□□□ -1.85
VPS29-202ENST00000447578 OR1G1P47890 313 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 HTR5AP47898 357 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 PGFP49763 221 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 ARPP19P56211 112 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 RAB10P61026 200 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 MAXP61244 160 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 DHODHQ02127 395 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 ZNF33AQ06730 810 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 RIGQ13278 110 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 PEX6Q13608 980 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 SLC17A1Q14916 467 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 ZMYND11Q15326 602 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 TRMT5Q32P41 509 aaKnown RBP3.49□□□□□ -1.85
VPS29-202ENST00000447578 FFAR4Q5NUL3 377 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 EPGNQ6UW88 154 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 Q7L0L9 218 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 SCD5Q86SK9 330 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 RANBP3LQ86VV4 465 aaPredicted RBP3.49□□□□□ -1.85
VPS29-202ENST00000447578 OR9Q2Q8NGE9 314 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 ZNF524Q96C55 264 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 SLC25A36Q96CQ1 311 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 TUBGCP3Q96CW5 907 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 ZNF501Q96CX3 271 aaPredicted RBP3.49□□□□□ -1.85
VPS29-202ENST00000447578 MOCOSQ96EN8 888 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 PRAC1Q96KF2 57 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 PPP1R2P1Q96PQ5 205 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 GPR22Q99680 433 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 ALG12Q9BV10 488 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 PINK1Q9BXM7 581 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 SHCBP1LQ9BZQ2 653 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 DRC3Q9H069 523 aa3.49□□□□□ -1.85
VPS29-202ENST00000447578 ILKAPQ9H0C8 392 aaPredicted RBP3.49□□□□□ -1.85
VPS29-202ENST00000447578 UPF3AQ9H1J1 476 aaKnown RBP3.49□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms