RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 EPHB3P54753 998 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 PRMT2P55345 433 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 TNFRSF17Q02223 184 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 GGTLC2Q14390 218 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 OR1Q1Q15612 314 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 CEBPEQ15744 281 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 NDUFAF6Q330K2 333 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 TMCO2Q7Z6W1 182 aaPredicted RBP9.82□□□□□ -0.84
USP54-204ENST00000422491 CCDC36Q8IYA8 594 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 ARMC10Q8N2F6 343 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 OR2L13Q8N349 312 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 ADAMTS15Q8TE58 950 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 GLYATL2Q8WU03 294 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 SNX33Q8WV41 574 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 CDS1Q92903 461 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 ZNF75AQ96N20 296 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 ZNF681Q96N22 645 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 CNN2Q99439 309 aaKnown RBP9.82□□□□□ -0.84
USP54-204ENST00000422491 CHST6Q9GZX3 395 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 C6orf106Q9H6K1 298 aaPredicted RBP9.82□□□□□ -0.84
USP54-204ENST00000422491 GAREM1Q9H706 876 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 APMAPQ9HDC9 416 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 MEPEQ9NQ76 525 aaPredicted RBP9.82□□□□□ -0.84
USP54-204ENST00000422491 LRFN2Q9ULH4 789 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 PCDHB10Q9UN67 800 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 WDR45Q9Y484 360 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 ETV7Q9Y603 341 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 RAB19A4D1S5 217 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 LEFTY2O00292 366 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 SPINT1O43278 529 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 RBBP9O75884 186 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 GLAP06280 429 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 GKN3PP0CG01 181 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 CST5P28325 142 aaPredicted RBP9.82□□□□□ -0.84
USP54-204ENST00000422491 AGTR1P30556 359 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 MPIP34949 423 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 NAA10P41227 235 aaPredicted RBP9.82□□□□□ -0.84
USP54-204ENST00000422491 PLA2G7Q13093 441 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 ZNF345Q14585 488 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 FAM209BQ5JX69 171 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 CST9Q5W186 159 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 FAM111BQ6SJ93 734 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 SLC35F2Q8IXU6 374 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 DND1Q8IYX4 353 aaKnown RBP9.82□□□□□ -0.84
USP54-204ENST00000422491 ACOT4Q8N9L9 421 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 BOLLQ8N9W6 283 aaKnown RBP9.82□□□□□ -0.84
USP54-204ENST00000422491 POMGNT2Q8NAT1 580 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 SDR9C7Q8NEX9 313 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 SFT2D1Q8WV19 159 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 PHYHIPLQ96FC7 376 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 ZNF514Q96K75 400 aaPredicted RBP9.82□□□□□ -0.84
USP54-204ENST00000422491 MACROD1Q9BQ69 325 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 PCBD2Q9H0N5 130 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 C1orf198Q9H425 327 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 PRDM7Q9NQW5 492 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 IL36AQ9UHA7 158 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 ZNF230Q9UIE0 474 aaPredicted RBP9.82□□□□□ -0.84
USP54-204ENST00000422491 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.82□□□□□ -0.84
USP54-204ENST00000422491 LRRK1Q38SD2 2015 aa9.82□□□□□ -0.84
USP54-204ENST00000422491 OR6C68A6NDL8 312 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 OR2W5A6NFC9 320 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 CD8AP01732 235 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 IFNA4P05014 189 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 SPP1P10451 314 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 ITPKBP27987 946 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 NANOS3P60323 173 aaKnown RBP9.81□□□□□ -0.84
USP54-204ENST00000422491 DUSP8Q13202 625 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 TMEM35AQ53FP2 167 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 EIPR1Q53HC9 387 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 PAN3Q58A45 887 aaKnown RBP9.81□□□□□ -0.84
USP54-204ENST00000422491 C10orf91Q5T1B1 145 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 MFSD12Q6NUT3 480 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 PARS2Q7L3T8 475 aaKnown RBP9.81□□□□□ -0.84
USP54-204ENST00000422491 KRT77Q7Z794 578 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 OR51S1Q8NGJ8 323 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 OR1S2Q8NGQ3 325 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 OR5K2Q8NHB8 316 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 OR14A16Q8NHC5 309 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 DUSP19Q8WTR2 217 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 CYB5D2Q8WUJ1 264 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 MRGPRX3Q96LB0 322 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 CMSS1Q9BQ75 279 aaKnown RBP9.81□□□□□ -0.84
USP54-204ENST00000422491 TMEM185BQ9H7F4 350 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 IL21RQ9HBE5 538 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 PRSS16Q9NQE7 514 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 NCDNQ9UBB6 729 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 GPR34Q9UPC5 381 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 ZNF281Q9Y2X9 895 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 IDSB3KWA1 339 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 ERI3O43414 337 aaKnown RBP9.81□□□□□ -0.84
USP54-204ENST00000422491 BCL2L11O43521 198 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 SLC25A12O75746 678 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 ZFPL1O95159 310 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 PAK4O96013 591 aaPredicted RBP9.81□□□□□ -0.84
USP54-204ENST00000422491 THBS1P07996 1170 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 ACAA1P09110 424 aaPredicted RBP9.81□□□□□ -0.84
USP54-204ENST00000422491 CSF1P09603 554 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 ADRA2CP18825 462 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 BDKRB2P30411 391 aa9.81□□□□□ -0.84
USP54-204ENST00000422491 KCNJ3P48549 501 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms