RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 ZNF587Q96SQ5 575 aaPredicted RBP11.09□□□□□ -0.63
SKA1-203ENST00000417656 THTPAQ9BU02 230 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 ZNF426Q9BUY5 554 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 EMC3Q9P0I2 261 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 C6orf203Q9P0P8 240 aaPredicted RBP11.09□□□□□ -0.63
SKA1-203ENST00000417656 RHCGQ9UBD6 479 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 RIMS3Q9UJD0 308 aa11.09□□□□□ -0.63
SKA1-203ENST00000417656 A8MXE2 369 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 hCG_2039718K7EN88 272 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 GYG2O15488 501 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 OR2T1O43869 369 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 PIP5K1CO60331 668 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 COX6B1P14854 86 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 CCKARP32238 428 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 UGT2B15P54855 530 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 LTBQ06643 244 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 BNIP1Q12981 228 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 PDK3Q15120 406 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 EXOC3L2Q2M3D2 409 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 TSEN54Q7Z6J9 526 aaKnown RBP11.08□□□□□ -0.64
SKA1-203ENST00000417656 GPAT4Q86UL3 456 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 ACBD4Q8NC06 268 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 OR6S1Q8NH40 331 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 PFN4Q8NHR9 129 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 ENKD1Q9H0I2 346 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 MAN2C1Q9NTJ4 1040 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 ACTR3BQ9P1U1 418 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 FLVCR1Q9Y5Y0 555 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 ENPP4Q9Y6X5 453 aa11.08□□□□□ -0.64
SKA1-203ENST00000417656 ENO4A6NNW6 628 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 FFAR1O14842 300 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 DIRAS1O95057 198 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 PRSS23O95084 383 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 SEMG1P04279 462 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 THRBP10828 461 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 RBM34P42696 430 aaKnown RBP11.07□□□□□ -0.64
SKA1-203ENST00000417656 VLDLRP98155 873 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 ST3GAL3Q11203 375 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 SLC17A1Q14916 467 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 ZNF74Q16587 644 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 LCN8Q6JVE9 175 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 CASP12Q6UXS9 341 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 GALNT5Q7Z7M9 940 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 STK32CQ86UX6 486 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 CYP4Z1Q86W10 505 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 DMRTC2Q8IXT2 367 aaPredicted RBP11.07□□□□□ -0.64
SKA1-203ENST00000417656 OR9K2Q8NGE7 335 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 TMEM239Q8WW34 195 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 PYURFQ96I23 114 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 FNDC11Q9BVV2 318 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 ASPNQ9BXN1 380 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 SLC19A3Q9BZV2 496 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 MUC13Q9H3R2 512 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 MEPEQ9NQ76 525 aaPredicted RBP11.07□□□□□ -0.64
SKA1-203ENST00000417656 PLSCR4Q9NRQ2 329 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 NDUFAF4Q9P032 175 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 PRSS50Q9UI38 385 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 FOXD3Q9UJU5 478 aaPredicted RBP11.07□□□□□ -0.64
SKA1-203ENST00000417656 NOSIPQ9Y314 301 aaKnown RBP11.07□□□□□ -0.64
SKA1-203ENST00000417656 ADGRG4Q8IZF6 3080 aa11.07□□□□□ -0.64
SKA1-203ENST00000417656 TCRBV5S2A0A599 114 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 GPR171O14626 319 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 CH25HO95992 272 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 MT-ATP6P00846 226 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 POU2F1P14859 743 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 NQO1P15559 274 aaKnown RBP11.06□□□□□ -0.64
SKA1-203ENST00000417656 IFNA8P32881 189 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 NTF4P34130 210 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 CD79BP40259 229 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 OR3A2P47893 321 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 CBX1P83916 185 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 SORDQ00796 357 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 MS4A2Q01362 244 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 IL1RL1Q01638 556 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 FAM27E3Q08E93 113 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 TRIM25Q14258 630 aaKnown RBP11.06□□□□□ -0.64
SKA1-203ENST00000417656 MFSD13AQ14CX5 517 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 MTX3Q5HYI7 312 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 TMEM225Q6GV28 225 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 SLC46A3Q7Z3Q1 461 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 DHFR2Q86XF0 187 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 ZNF100Q8IYN0 542 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 KDM8Q8N371 416 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 SCAIQ8N9R8 606 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 APH1AQ96BI3 265 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 ASB9Q96DX5 294 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 C7orf34Q96L11 122 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 ZNF385AQ96PM9 386 aaKnown RBP11.06□□□□□ -0.64
SKA1-203ENST00000417656 SPOCK3Q9BQ16 436 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 BTBD10Q9BSF8 475 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 SF3B5Q9BWJ5 86 aaKnown RBP11.06□□□□□ -0.64
SKA1-203ENST00000417656 C20orf141Q9NUB4 165 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 B3GAT1Q9P2W7 334 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 RASD1Q9Y272 281 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 CORINQ9Y5Q5 1042 aa11.06□□□□□ -0.64
SKA1-203ENST00000417656 HNRNPRO43390 633 aaKnown RBP11.05□□□□□ -0.64
SKA1-203ENST00000417656 DNAJC8O75937 253 aaPredicted RBP11.05□□□□□ -0.64
SKA1-203ENST00000417656 HPRP00739 348 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 IGHV3-9P01782 118 aa11.05□□□□□ -0.64
SKA1-203ENST00000417656 MT-ND1P03886 318 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms