RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 GGTLC2Q14390 218 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 ZNF267Q14586 743 aaPredicted RBP13.53□□□□□ -0.24
USP4-203ENST00000415188 KLHL12Q53G59 568 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 PYDC2Q56P42 97 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 ZMAT1Q5H9K5 638 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 ZNF362Q5T0B9 420 aaPredicted RBP13.53□□□□□ -0.24
USP4-203ENST00000415188 TMEM164Q5U3C3 297 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 PAMR1Q6UXH9 720 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 CARFQ8N187 725 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 CELF2-AS1Q8N7Q2 184 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 TEX19Q8NA77 164 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 AGBL5Q8NDL9 886 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 OR5W2Q8NH69 310 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 TAAR9Q96RI9 348 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 TIMP4Q99727 224 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 MAP3K3Q99759 626 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 RERGLQ9H628 205 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 MED20Q9H944 212 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 ADGRL4Q9HBW9 690 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 TIGARQ9NQ88 270 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 ENAMQ9NRM1 1142 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 INIPQ9NRY2 104 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 SACM1LQ9NTJ5 587 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 MMACHCQ9Y4U1 282 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 CLDN16Q9Y5I7 305 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 B3GALT1Q9Y5Z6 326 aa13.53□□□□□ -0.24
USP4-203ENST00000415188 HELZ2Q9BYK8 2649 aaKnown RBP13.53□□□□□ -0.24
USP4-203ENST00000415188 A0A087WUJ7 227 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 CD8B2A6NJW9 211 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 A8MU76 341 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 DUX1O43812 170 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 IDH3BO43837 385 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 SERPINA3P01011 423 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 CD8BP10966 210 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 PLA2G2AP14555 144 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 PTNP21246 168 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 NOS3P29474 1203 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 LCN1P31025 176 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 ADH7P40394 386 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 RFX3P48380 749 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 EPHA4P54764 986 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 ACTA2P62736 377 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 ACTG2P63267 376 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 CRYZQ08257 329 aaKnown RBP13.52□□□□□ -0.25
USP4-203ENST00000415188 FHL1Q13642 323 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 CRMP1Q14194 572 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 SDK2Q58EX2 2172 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 SLC35D3Q5M8T2 416 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 HBMQ6B0K9 141 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 CNIH2Q6PI25 160 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 KIRREL2Q6UWL6 708 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 DPY19L2P2Q6ZN68 376 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 SYS1Q8N2H4 156 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 MS4A15Q8N5U1 240 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 OR51A7Q8NH64 312 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 SMPDL3BQ92485 455 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 ZC3HAV1LQ96H79 300 aaKnown RBP13.52□□□□□ -0.25
USP4-203ENST00000415188 PTCHD1Q96NR3 888 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 TNFRSF13CQ96RJ3 184 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 DPYSL5Q9BPU6 564 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 HCAR1Q9BXC0 346 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 RNF32Q9H0A6 362 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 OR10A5Q9H207 317 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 PIEZO2Q9H5I5 2752 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 PPP1R3EQ9H7J1 279 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 ISG20L2Q9H9L3 353 aaKnown RBP13.52□□□□□ -0.25
USP4-203ENST00000415188 SLC39A1Q9NY26 324 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 COMMD3Q9UBI1 195 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 CHRNA9Q9UGM1 479 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 OR10H1Q9Y4A9 318 aa13.52□□□□□ -0.25
USP4-203ENST00000415188 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.51□□□□□ -0.25
USP4-203ENST00000415188 STMND1H3BQB6 276 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 ARPC3O15145 178 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 CSTAP01040 98 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 CTSBP07858 339 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 CT45A8P0DMV1 189 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 CT45A9P0DMV2 189 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 MYL9P24844 172 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 CD82P27701 267 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 HTR3AP46098 478 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 GRM7Q14831 915 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 LINC00303Q3SY05 128 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 CT45A2Q5DJT8 189 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 TRIQKQ629K1 86 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 MZT2BQ6NZ67 158 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 VASH1Q7L8A9 365 aaPredicted RBP13.51□□□□□ -0.25
USP4-203ENST00000415188 RDH10Q8IZV5 341 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 SHISA5Q8N114 240 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 BCORP1Q8N888 145 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 ZNF615Q8N8J6 731 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 BMPERQ8N8U9 685 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 EXD3Q8N9H8 876 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 ZNF527Q8NB42 609 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 FAM71CQ8NEG0 241 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 OR4N2Q8NGD1 307 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 C16orf52Q8NHV5 167 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 EXTL1Q92935 676 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 TP53INP1Q96A56 240 aa13.51□□□□□ -0.25
USP4-203ENST00000415188 GPX7Q96SL4 187 aaPredicted RBP13.51□□□□□ -0.25
USP4-203ENST00000415188 TTYH2Q9BSA4 534 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms