RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 CHTF18Q8WVB6 975 aa18.31■□□□□ 0.52
SHANK1-203ENST00000391813 BTF3L4Q96K17 158 aa18.31■□□□□ 0.52
SHANK1-203ENST00000391813 SIDT1Q9NXL6 827 aaKnown RBP18.31■□□□□ 0.52
SHANK1-203ENST00000391813 NDRG3Q9UGV2 375 aa18.31■□□□□ 0.52
SHANK1-203ENST00000391813 ZNF225Q9UK10 706 aa18.31■□□□□ 0.52
SHANK1-203ENST00000391813 A0A0A6YYJ9 748 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 OR2T1O43869 369 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 TMEM225BP0DP42 221 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 POU3F4P49335 361 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 DCST2Q5T1A1 773 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 NIPAL3Q6P499 406 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 RNF175Q8N4F7 328 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 SORCS2Q96PQ0 1159 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 PRAMEF26H0Y7S4 382 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 SEC14L5O43304 696 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 TGFBR1P36897 503 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 TMPRSS9Q7Z410 1059 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 CMTM1Q8IZ96 169 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 SLC30A7Q8NEW0 376 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 OPALINQ96PE5 141 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 CRB3Q9BUF7 120 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 TMEM121BQ9BXQ6 578 aaPredicted RBP18.3■□□□□ 0.52
SHANK1-203ENST00000391813 HBE1P02100 147 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 HIST1H1TP22492 207 aaPredicted RBP18.3■□□□□ 0.52
SHANK1-203ENST00000391813 NR0B1P51843 470 aaKnown RBP18.3■□□□□ 0.52
SHANK1-203ENST00000391813 GBX1Q14549 363 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 YIF1BQ5BJH7 314 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 PDSS1Q5T2R2 415 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 BTLAQ7Z6A9 289 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 CLRN3Q8NCR9 226 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 SLC22A11Q9NSA0 550 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 MOKQ9UQ07 419 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 LAMA4Q16363 1823 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 A0A0U1RQS6 177 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 PAPLNO95428 1278 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 MAGEB1P43366 347 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 NLRC3Q7RTR2 1065 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 PRSS42Q7Z5A4 293 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 OR10R2Q8NGX6 335 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 SMIM3Q9BZL3 60 aa18.3■□□□□ 0.52
SHANK1-203ENST00000391813 OR6C6A6NF89 314 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 TYRP1P17643 537 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 MAOBP27338 520 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 THBS2P35442 1172 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 TAS2R46P59540 309 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 ACVR1Q04771 509 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 TPBGQ13641 420 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 GRM7Q14831 915 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 RNF212Q495C1 297 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 C6orf132Q5T0Z8 1188 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 C1orf94Q6P1W5 598 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 TANKQ92844 425 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 CDS1Q92903 461 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 SLC6A20Q9NP91 592 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 INIPQ9NRY2 104 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 PUS1Q9Y606 427 aaKnown RBP eCLIP18.29■□□□□ 0.52
SHANK1-203ENST00000391813 SCO2O43819 266 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 ABLIM3O94929 683 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 C1orf105O95561 183 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 HOXB5P09067 269 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 SHC2P98077 582 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 SLC25A37Q9NYZ2 338 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 HCSTQ9UBK5 93 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 STMND1H3BQB6 276 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 SNTB1Q13884 538 aaKnown RBP18.29■□□□□ 0.52
SHANK1-203ENST00000391813 GPR18Q14330 331 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 FAM78AQ5JUQ0 283 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 VASNQ6EMK4 673 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 FAM174AQ8TBP5 190 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 HAS2Q92819 552 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 ST6GALNAC5Q9BVH7 336 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 PDE7BQ9NP56 450 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 MYEF2Q9P2K5 600 aaKnown RBP18.29■□□□□ 0.52
SHANK1-203ENST00000391813 PRELID3BQ9Y3B1 194 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 ARRDC5A6NEK1 342 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 VSTM2BA6NLU5 285 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 SERPINF1P36955 418 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 CLDN12P56749 244 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 KCNJ10P78508 379 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 RPE65Q16518 533 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 COX20Q5RI15 118 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 HEPHL1Q6MZM0 1159 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 OVCH1Q7RTY7 1134 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 MRPL41Q8IXM3 137 aaKnown RBP18.29■□□□□ 0.52
SHANK1-203ENST00000391813 CHST14Q8NCH0 376 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 ASB13Q8WXK3 278 aa18.29■□□□□ 0.52
SHANK1-203ENST00000391813 FAM227AF5H4B4 570 aa18.28■□□□□ 0.52
SHANK1-203ENST00000391813 RGS11O94810 467 aa18.28■□□□□ 0.52
SHANK1-203ENST00000391813 HTR3BO95264 441 aa18.28■□□□□ 0.52
SHANK1-203ENST00000391813 MMP11P24347 488 aa18.28■□□□□ 0.52
SHANK1-203ENST00000391813 HOXD9P28356 352 aaPredicted RBP18.28■□□□□ 0.52
SHANK1-203ENST00000391813 CX3CR1P49238 355 aa18.28■□□□□ 0.52
SHANK1-203ENST00000391813 PRLHRP49683 370 aa18.28■□□□□ 0.52
SHANK1-203ENST00000391813 HIST2H3PS2Q5TEC6 136 aa18.28■□□□□ 0.52
SHANK1-203ENST00000391813 POC1BQ8TC44 478 aa18.28■□□□□ 0.52
SHANK1-203ENST00000391813 LIN37Q96GY3 246 aaPredicted RBP18.28■□□□□ 0.52
SHANK1-203ENST00000391813 ZNF578Q96N58 590 aaPredicted RBP18.28■□□□□ 0.52
SHANK1-203ENST00000391813 PRRC2BQ5JSZ5 2229 aaKnown RBP18.28■□□□□ 0.52
SHANK1-203ENST00000391813 SMAD6O43541 496 aaKnown RBP18.28■□□□□ 0.52
SHANK1-203ENST00000391813 PLGP00747 810 aaPredicted RBP18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms