RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 IGKV3-11P04433 115 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 F13BP05160 661 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 OR2T7P0C7T2 308 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 SNRPBP14678 240 aaKnown RBP12.2□□□□□ -0.46
CCDC3-202ENST00000378839 CD53P19397 219 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 CFL1P23528 166 aaKnown RBP12.2□□□□□ -0.46
CCDC3-202ENST00000378839 BTCP35070 178 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 ZNF74Q16587 644 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 ASB18Q6ZVZ8 466 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 OR2T27Q8NH04 317 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 TRMT10AQ8TBZ6 339 aaKnown RBP12.2□□□□□ -0.46
CCDC3-202ENST00000378839 ENKURQ8TC29 256 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 PHOSPHO1Q8TCT1 267 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 RGP1Q92546 391 aaPredicted RBP12.2□□□□□ -0.46
CCDC3-202ENST00000378839 SMIM19Q96E16 107 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 OR8D2Q9GZM6 311 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 PDE7BQ9NP56 450 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 ZNF337Q9Y3M9 751 aa12.2□□□□□ -0.46
CCDC3-202ENST00000378839 H0YIG0 161 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 NPR2P20594 1047 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 CCR4P51679 360 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 ACTC1P68032 377 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 ACTA1P68133 377 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 SIRPAP78324 504 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 CD83Q01151 205 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 GPR176Q14439 515 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 VWA2Q5GFL6 755 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 ZNF684Q5T5D7 378 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 C1QL3Q5VWW1 255 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 OTPQ5XKR4 325 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 OR6K6Q8NGW6 343 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 ACOT12Q8WYK0 555 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 ADOQ96SZ5 270 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 CUTCQ9NTM9 273 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 MUC3AQ02505 3323 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 H7C1C5 153 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 ARPC3O15145 178 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 ICOSLGO75144 302 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 IL33O95760 270 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 GPANK1O95872 356 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 ADRB1P08588 477 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 PTBP1P26599 531 aaKnown RBP eCLIP12.19□□□□□ -0.46
CCDC3-202ENST00000378839 CSNK1EP49674 416 aaKnown RBP12.19□□□□□ -0.46
CCDC3-202ENST00000378839 RAB25P57735 213 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 LCN6P62502 163 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 OGFOD3Q6PK18 319 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 LRRC28Q86X40 367 aaPredicted RBP12.19□□□□□ -0.46
CCDC3-202ENST00000378839 OR1L3Q8NH93 324 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 RELTQ969Z4 430 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 NUDT9Q9BW91 350 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 CHRDQ9H2X0 955 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 RPRD1BQ9NQG5 326 aaKnown RBP12.19□□□□□ -0.46
CCDC3-202ENST00000378839 KLHL21Q9UJP4 597 aa12.19□□□□□ -0.46
CCDC3-202ENST00000378839 PCNX3Q9H6A9 2034 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 TMEM150CB9EJG8 249 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 TNFRSF10AO00220 468 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 SCO1O75880 301 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 PSMD4P55036 377 aaKnown RBP12.18□□□□□ -0.46
CCDC3-202ENST00000378839 POU4F2Q12837 409 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 PON3Q15166 354 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 LEG1Q6P5S2 330 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 CEP76Q8TAP6 659 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 HSPA12BQ96MM6 686 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 ELF4Q99607 663 aaPredicted RBP12.18□□□□□ -0.46
CCDC3-202ENST00000378839 THAP7Q9BT49 309 aaPredicted RBP12.18□□□□□ -0.46
CCDC3-202ENST00000378839 UBQLN4Q9NRR5 601 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 SDK1Q7Z5N4 2213 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 BLACEA4D250 179 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 FZD7O75084 574 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 TSC22D2O75157 780 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 ZNF217O75362 1048 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 ASAH2BP0C7U1 165 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 UBL4AP11441 157 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 FOLR1P15328 257 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 CSF2RBP32927 897 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 TAS2R43P59537 309 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 ZP2Q05996 745 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 QPRTQ15274 297 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 CLPPQ16740 277 aaPredicted RBP12.18□□□□□ -0.46
CCDC3-202ENST00000378839 SLC36A2Q495M3 483 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 C9orf40Q8IXQ3 194 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 PRSS58Q8IYP2 241 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 TEX19Q8NA77 164 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 ZNF578Q96N58 590 aaPredicted RBP12.18□□□□□ -0.46
CCDC3-202ENST00000378839 GPX7Q96SL4 187 aaPredicted RBP12.18□□□□□ -0.46
CCDC3-202ENST00000378839 LPAR4Q99677 370 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 MMP25Q9NPA2 562 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 AK6Q9Y3D8 172 aaKnown RBP12.18□□□□□ -0.46
CCDC3-202ENST00000378839 FER1L5A0AVI2 2057 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 A0A1B0GTH9 108 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 ELOA3DA6NLF2 546 aaPredicted RBP12.18□□□□□ -0.46
CCDC3-202ENST00000378839 LMO7DNF2Z398 122 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 EEF1E1O43324 174 aaKnown RBP12.18□□□□□ -0.46
CCDC3-202ENST00000378839 ICMTO60725 284 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 EPXP11678 715 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 RAB3BP20337 219 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 RPS27P42677 84 aaKnown RBP12.18□□□□□ -0.46
CCDC3-202ENST00000378839 PPICP45877 212 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 CLDN20P56880 219 aa12.18□□□□□ -0.46
CCDC3-202ENST00000378839 SNRPD2P62316 118 aaKnown RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms