RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 SLC41A3Q96GZ6 507 aa13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 PRSS27Q9BQR3 290 aa13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 TAPBPLQ9BX59 468 aa13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 PLSCR4Q9NRQ2 329 aa13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 LRRN3E7EW58 273 aa13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 J3KTA2 159 aa13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 EIF1BO60739 113 aaKnown RBP13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 FKBP6O75344 327 aa13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 ANPEPP15144 967 aa13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 YAP1P46937 504 aaKnown RBP13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 LTBQ06643 244 aa13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 IFI44LQ53G44 452 aa13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 DMRTC2Q8IXT2 367 aaPredicted RBP13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 MFSD8Q8NHS3 518 aa13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 PIGXQ8TBF5 258 aa13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 TACO1Q9BSH4 297 aaKnown RBP13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 GP6Q9HCN6 339 aa13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 DCAF13Q9NV06 445 aaKnown RBP13.4□□□□□ -0.26
SMPDL3A-201ENST00000368440 TRAV36DV7A0A075B6V5 113 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 IGKV3D-15A0A087WSY6 115 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 AQP7P3A6NL99 342 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 CYSRT1A8MQ03 144 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 COX6B1P14854 86 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 NTF4P34130 210 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 TAS2R41P59536 307 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 FOXD4Q12950 439 aaPredicted RBP13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 EXOC3L2Q2M3D2 409 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 FKBP9P1Q75LS8 142 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 TSEN54Q7Z6J9 526 aaKnown RBP13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 NKAIN4Q8IVV8 208 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 SPOCK3Q9BQ16 436 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 NAA11Q9BSU3 229 aaPredicted RBP13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 TMEM43Q9BTV4 400 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 GORASP2Q9H8Y8 452 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 MAGEL2Q9UJ55 1249 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 RIMS3Q9UJD0 308 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 A4GNTQ9UNA3 340 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 DCHS2Q6V1P9 2916 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 FREM1Q5H8C1 2179 aa13.39□□□□□ -0.27
SMPDL3A-201ENST00000368440 ZNF724A8MTY0 619 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 KPNA4O00629 521 aaPredicted RBP13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 FZD7O75084 574 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 OR5F1O95221 314 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 BGLAPP02818 100 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 IFNW1P05000 195 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 GRPRP30550 384 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 SLC16A1P53985 500 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 FAM27E3Q08E93 113 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 SLC17A1Q14916 467 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 PDK3Q15120 406 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 FAM69AQ5T7M9 428 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 C5orf46Q6UWT4 87 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 TFAP2EQ6VUC0 442 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 GEMIN6Q8WXD5 167 aaKnown RBP13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 MARVELD3Q96A59 401 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 MOGAT1Q96PD6 335 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 ZNF426Q9BUY5 554 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 TRIM15Q9C019 465 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 ACTR3BQ9P1U1 418 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 STX18Q9P2W9 335 aaKnown RBP13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 RHCGQ9UBD6 479 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 RPS6KA6Q9UK32 745 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 AURKCQ9UQB9 309 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 H3BNX3 289 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 M0R082 166 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 GMNNO75496 209 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 CCKARP32238 428 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 SLC34A1Q06495 639 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 KDM8Q8N371 416 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 ZNF417Q8TAU3 575 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 TMEM255BQ8WV15 326 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 PRRC1Q96M27 445 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 ZNF587Q96SQ5 575 aaPredicted RBP13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 POLR2J2Q9GZM3 115 aaKnown RBP13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 POLR2J3Q9H1A7 115 aaKnown RBP13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 PRSS50Q9UI38 385 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 FOXD3Q9UJU5 478 aaPredicted RBP13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 FLVCR1Q9Y5Y0 555 aa13.38□□□□□ -0.27
SMPDL3A-201ENST00000368440 FFAR1O14842 300 aa13.37□□□□□ -0.27
SMPDL3A-201ENST00000368440 CD79BP40259 229 aa13.37□□□□□ -0.27
SMPDL3A-201ENST00000368440 UGT2B15P54855 530 aa13.37□□□□□ -0.27
SMPDL3A-201ENST00000368440 SPATS1Q496A3 300 aa13.37□□□□□ -0.27
SMPDL3A-201ENST00000368440 TTC33Q6PID6 262 aaPredicted RBP13.37□□□□□ -0.27
SMPDL3A-201ENST00000368440 GALNT5Q7Z7M9 940 aa13.37□□□□□ -0.27
SMPDL3A-201ENST00000368440 GPAT4Q86UL3 456 aa13.37□□□□□ -0.27
SMPDL3A-201ENST00000368440 OR9K2Q8NGE7 335 aa13.37□□□□□ -0.27
SMPDL3A-201ENST00000368440 LRRC46Q96FV0 321 aa13.37□□□□□ -0.27
SMPDL3A-201ENST00000368440 MPP4Q96JB8 637 aa13.37□□□□□ -0.27
SMPDL3A-201ENST00000368440 NSMCE2Q96MF7 247 aa13.37□□□□□ -0.27
SMPDL3A-201ENST00000368440 EPYCQ99645 322 aa13.37□□□□□ -0.27
SMPDL3A-201ENST00000368440 MEPEQ9NQ76 525 aaPredicted RBP13.37□□□□□ -0.27
SMPDL3A-201ENST00000368440 EMC3Q9P0I2 261 aa13.37□□□□□ -0.27
SMPDL3A-201ENST00000368440 SAMD4AQ9UPU9 718 aaKnown RBP13.37□□□□□ -0.27
SMPDL3A-201ENST00000368440 FBN2P35556 2912 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 HNRNPRO43390 633 aaKnown RBP13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 OR2T1O43869 369 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 PRSS23O95084 383 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 PRF1P14222 555 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 POU2F1P14859 743 aa13.36□□□□□ -0.27
SMPDL3A-201ENST00000368440 GTF2E2P29084 291 aaKnown RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms