RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 AAED1Q7RTV5 226 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 EPHX4Q8IUS5 362 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 BHLHE22Q8NFJ8 381 aaPredicted RBP16.16■□□□□ 0.18
CLN3-202ENST00000355477 KBTBD8Q8NFY9 601 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 GPR32P1Q8NGA4 272 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 OR52N5Q8NH56 324 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 OR10A6Q8NH74 314 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 DNAJA4Q8WW22 397 aaPredicted RBP16.16■□□□□ 0.18
CLN3-202ENST00000355477 SLC38A4Q969I6 547 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 PERPQ96FX8 193 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 PIF1Q9H611 641 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 NANOGQ9H9S0 305 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 UPB1Q9UBR1 384 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 TESQ9UGI8 421 aaKnown RBP16.16■□□□□ 0.18
CLN3-202ENST00000355477 SLC25A15Q9Y619 301 aa16.16■□□□□ 0.18
CLN3-202ENST00000355477 VAMP5O95183 116 aa16.15■□□□□ 0.18
CLN3-202ENST00000355477 LGI1O95970 557 aa16.15■□□□□ 0.18
CLN3-202ENST00000355477 LGALS3BPQ08380 585 aa16.15■□□□□ 0.18
CLN3-202ENST00000355477 ZNF672Q499Z4 452 aaPredicted RBP16.15■□□□□ 0.18
CLN3-202ENST00000355477 Q5PR19 223 aa16.15■□□□□ 0.18
CLN3-202ENST00000355477 FAM91A1Q658Y4 838 aa16.15■□□□□ 0.18
CLN3-202ENST00000355477 ULK3Q6PHR2 472 aa16.15■□□□□ 0.18
CLN3-202ENST00000355477 WDR31Q8NA23 367 aa16.15■□□□□ 0.18
CLN3-202ENST00000355477 SLCO5A1Q9H2Y9 848 aa16.15■□□□□ 0.18
CLN3-202ENST00000355477 RASD1Q9Y272 281 aa16.15■□□□□ 0.18
CLN3-202ENST00000355477 NSD1Q96L73 2696 aaPredicted RBP16.15■□□□□ 0.18
CLN3-202ENST00000355477 A0A0B4J2E0 115 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 A0A1B0GX12 115 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 M0R3H8 397 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 FXYD1O00168 92 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 ARHGEF9O43307 516 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 FZD7O75084 574 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 PTNP21246 168 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 PTH2RP49190 550 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 SELENOPP49908 381 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 ZNF83P51522 516 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 CYLC2Q14093 348 aaPredicted RBP16.14■□□□□ 0.17
CLN3-202ENST00000355477 NPTX1Q15818 432 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 TRMT5Q32P41 509 aaKnown RBP16.14■□□□□ 0.17
CLN3-202ENST00000355477 RABL3Q5HYI8 236 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 OR7E24Q6IFN5 339 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 OR4D11Q8NGI4 311 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 RNF217Q8TC41 542 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 TMEM171Q8WVE6 324 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 LRRC58Q96CX6 371 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 SLC47A1Q96FL8 570 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 ARHGDIGQ99819 225 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 C1QTNF6Q9BXI9 259 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 GSX2Q9BZM3 304 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 AMBRA1Q9C0C7 1298 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 GSX1Q9H4S2 264 aaPredicted RBP16.14■□□□□ 0.17
CLN3-202ENST00000355477 CCDC134Q9H6E4 229 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 TMEM27Q9HBJ8 222 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 SLC13A4Q9UKG4 626 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 LAMP3Q9UQV4 416 aa16.14■□□□□ 0.17
CLN3-202ENST00000355477 TRAV36DV7A0A075B6V5 113 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 A0A087WUJ7 227 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 LOC100653049A0A140TA62 436 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 SHISA9B4DS77 424 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 KRT34O76011 436 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 SOD3P08294 240 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 DANCRP0C864 163 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 FOSL1P15407 271 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 CBLP22681 906 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 PCGF2P35227 344 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 CRYBA2P53672 197 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 CDH12P55289 794 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 NCALDP61601 193 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 SLC25A3Q00325 362 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 LTBQ06643 244 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 NRF1Q16656 503 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 FAM69AQ5T7M9 428 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 LINGO2Q7L985 606 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 SSX8Q7RTT4 187 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 RBM45Q8IUH3 476 aaKnown RBP16.13■□□□□ 0.17
CLN3-202ENST00000355477 POMGNT2Q8NAT1 580 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 FBXW5Q969U6 566 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 TAMM41Q96BW9 452 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 MCHR1Q99705 422 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 ZNF701Q9NV72 531 aaPredicted RBP16.13■□□□□ 0.17
CLN3-202ENST00000355477 KLHL14Q9P2G3 628 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 B3GAT1Q9P2W7 334 aa16.13■□□□□ 0.17
CLN3-202ENST00000355477 M0R082 166 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 ABCD4O14678 606 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 OR2T1O43869 369 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 C8BP07358 591 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 PAX1P15863 534 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 CDH2P19022 906 aaPredicted RBP16.12■□□□□ 0.17
CLN3-202ENST00000355477 CD247P20963 164 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 GTF2E2P29084 291 aaKnown RBP16.12■□□□□ 0.17
CLN3-202ENST00000355477 MPGP29372 298 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 GRPRP30550 384 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 CLDN17P56750 224 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 VMACQ2NL98 169 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 PGGHGQ32M88 737 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 MMEL1Q495T6 779 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 HSP90B2PQ58FF3 399 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 REP15Q6BDI9 236 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 NIPAL3Q6P499 406 aa16.12■□□□□ 0.17
CLN3-202ENST00000355477 C5orf46Q6UWT4 87 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms