RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 LYL1P12980 280 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 FOLR1P15328 257 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 CD40LGP29965 261 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SOX3P41225 446 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 RABIFP47224 123 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 MAPK12P53778 367 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 NANOS3P60323 173 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 STXBP1P61764 594 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 CHRNB3Q05901 458 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 Q0VFX4 171 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 HSPB3Q12988 150 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 GPR50Q13585 617 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 EXOSC7Q15024 291 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 TOMM34Q15785 309 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 BAK1Q16611 211 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ISXQ2M1V0 245 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 RFX4Q33E94 735 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 DMKNQ6E0U4 476 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 TMEM81Q6P7N7 255 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ZCCHC12Q6PEW1 402 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 WDR74Q6RFH5 385 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 CBLN3Q6UW01 205 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 C16orf54Q6UWD8 224 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 KIRREL2Q6UWL6 708 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 Q6ZPA2 131 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 C1orf122Q6ZSJ8 110 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 LPCAT2Q7L5N7 544 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 TRMT11Q7Z4G4 463 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 OR4N5Q8IXE1 308 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SLC35F3Q8IY50 421 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ST13P4Q8IZP2 240 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 FAM9CQ8IZT9 166 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 BCORP1Q8N888 145 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 DRAXINQ8NBI3 349 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 C17orf47Q8NEP4 570 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 NLGN4YQ8NFZ3 816 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 TTLQ8NG68 377 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 OR4C3Q8NH37 302 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 CDC26Q8NHZ8 85 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 STARD8Q92502 1023 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SLC25A28Q96A46 364 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SLC25A46Q96AG3 418 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 C3orf49Q96BT1 292 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 MOAP1Q96BY2 351 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 C8orf44Q96CB5 159 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 PLEKHA8Q96JA3 519 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 NECTIN4Q96NY8 510 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 NODALQ96S42 347 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 AIF1LQ9BQI0 150 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 RAB11FIP5Q9BXF6 653 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SRRQ9GZT4 340 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 FOLH1BQ9HBA9 442 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 BARX1Q9HBU1 254 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 PALMDQ9NP74 551 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 PNRC2Q9NPJ4 139 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 NRIP3Q9NQ35 241 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ING1Q9UK53 422 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 ZNF346Q9UL40 294 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 FAF1Q9UNN5 650 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 ENTPD2Q9Y5L3 495 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 HCFC1P51610 2035 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 A0A087WUJ7 227 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 LOC102723996A0A087X1L8 192 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 NPIPA5A0A0B4J1W7 369 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 IQCMA0A1B0GVH7 501 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 FAM90A18PA6NE21 464 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 FAM90A16PA6NEW6 464 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 FAM90A9PA6NNJ1 464 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 FAM90A5PA8MXJ8 464 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ZNF814B7Z6K7 855 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 NPIPA7E9PJI5 369 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 SGK494L7N484 410 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 LDLRAD4O15165 306 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ADAMDEC1O15204 470 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 OGG1O15527 345 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ERI3O43414 337 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 PLPP2O43688 288 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 LANCL1O43813 399 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 HS6ST1O60243 411 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 E2F6O75461 281 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 OR5F1O95221 314 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 GPR75O95800 540 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 HIST1H2AGP0C0S8 130 aaPredicted RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 FAM90A15PP0C7V4 464 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 FAM90A14PP0C7W9 464 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 NPIPA8P0DM63 369 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 NR2F6P10588 404 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 ANXA8P13928 327 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 KLK2P20151 261 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 HIST1H2ADP20671 130 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 IL11P20809 199 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 GALP22466 123 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 CD27P26842 260 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 NR0B1P51843 470 aaKnown RBP2.08□□□□□ -2.08
VPS54-202ENST00000354504 NCBP2P52298 156 aaKnown RBP eCLIP2.08□□□□□ -2.08
VPS54-202ENST00000354504 DGKEP52429 567 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 CLDN15P56746 228 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 RAC3P60763 192 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 RAB8AP61006 207 aa2.08□□□□□ -2.08
VPS54-202ENST00000354504 RPS25P62851 125 aaKnown RBP2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms