RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 GDPD3Q7L5L3 318 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 OR13C4Q8NGS5 318 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 IFI44Q8TCB0 444 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 PSMF1Q92530 271 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 LMLNQ96KR4 655 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 RFPL4AA6NLU0 287 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 RFPL4AL1F8VTS6 287 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 GPR171O14626 319 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 CTXN2P0C2S0 81 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 SERPINA2P20848 420 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 SIRPAP78324 504 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 DGKZQ13574 1117 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 TOMM34Q15785 309 aaPredicted RBP11.78□□□□□ -0.52
COL6A3-203ENST00000353578 ODF4Q2M2E3 257 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 FUT10Q6P4F1 479 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 UCN3Q969E3 161 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 PCED1BQ96HM7 432 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 ZNF558Q96NG5 402 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 TM7SF3Q9NS93 570 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 KLRF1Q9NZS2 232 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 SMIM10L2AP0DMW4 78 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 SMIM10L2BP0DMW5 78 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 RHBDL3P58872 404 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 ELOCQ15369 112 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 SMUG1Q53HV7 270 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 RPUSD3Q6P087 351 aaKnown RBP11.78□□□□□ -0.52
COL6A3-203ENST00000353578 FAM160A2Q8N612 972 aaPredicted RBP11.78□□□□□ -0.52
COL6A3-203ENST00000353578 NANOS1Q8WY41 292 aaKnown RBP11.78□□□□□ -0.52
COL6A3-203ENST00000353578 DUSP21Q9H596 190 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 PELI2Q9HAT8 420 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 ZNFX1Q9P2E3 1918 aaKnown RBP11.78□□□□□ -0.52
COL6A3-203ENST00000353578 SELENOFO60613 162 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 ITGB5P18084 799 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 VIPR1P32241 457 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 GPR4P46093 362 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 FAM69BQ5VUD6 431 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 OGFOD3Q6PK18 319 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 PHOSPHO1Q8TCT1 267 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 CASD1Q96PB1 797 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 SOX1O00570 391 aaPredicted RBP11.78□□□□□ -0.52
COL6A3-203ENST00000353578 ACTL6BO94805 426 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 ABLIM3O94929 683 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 APEHP13798 732 aaKnown RBP11.78□□□□□ -0.52
COL6A3-203ENST00000353578 GHRHRQ02643 423 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 TMEM19Q96HH6 336 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 MED9Q9NWA0 146 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 EXOGQ9Y2C4 368 aaKnown RBP11.78□□□□□ -0.52
COL6A3-203ENST00000353578 ABCA1O95477 2261 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 FER1L4A9Z1Z3 1794 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 NME2P22392 152 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 PCBD1P61457 104 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 PGBD5Q8N414 524 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 METTL9Q9H1A3 318 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 VCX2Q9H322 139 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 SLCO3A1Q9UIG8 710 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 LGI1O95970 557 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 LY6KQ17RY6 165 aa11.78□□□□□ -0.52
COL6A3-203ENST00000353578 PINX1Q96BK5 328 aaKnown RBP11.78□□□□□ -0.52
COL6A3-203ENST00000353578 SDHAP31040 664 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 VWA2Q5GFL6 755 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 CPXM2Q8N436 756 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 TMEM59Q9BXS4 323 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 ZNF275Q9NSD4 429 aaPredicted RBP11.77□□□□□ -0.52
COL6A3-203ENST00000353578 CSNK1G3Q9Y6M4 447 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 SLC9B1P1A6NJY1 282 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 ITGB8P26012 769 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 FABP9Q0Z7S8 132 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 TMEM130Q8N3G9 435 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 ZNF321PQ8N8H1 164 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 RAB18Q9NP72 206 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 TLR9Q9NR96 1032 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 S1PR4O95977 384 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 HTRA3P83110 453 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 CTU2Q2VPK5 515 aaKnown RBP11.77□□□□□ -0.52
COL6A3-203ENST00000353578 TMEM97Q5BJF2 176 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 TRAPPC6BQ86SZ2 158 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 UMODL1-AS1Q8N2C9 162 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 SLC22A24Q8N4F4 322 aa11.77□□□□□ -0.52
COL6A3-203ENST00000353578 CACNA1IQ9P0X4 2223 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 TMEM265A0A087WTH1 108 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 UPK3BL1B0FP48 263 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 UPK3BL2E5RIL1 263 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 NRP1O14786 923 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 SLC10A1Q14973 349 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 FAM74A3Q4VXF1 159 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 OR10Q1Q8NGQ4 319 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 SMIM4Q8WVI0 70 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 NPY6RQ99463 290 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 KCNJ15Q99712 375 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 ALG12Q9BV10 488 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 PLGP00747 810 aaPredicted RBP11.77□□□□□ -0.53
COL6A3-203ENST00000353578 BIDP55957 195 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 CGB2Q6NT52 195 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 ZNF689Q96CS4 500 aaPredicted RBP11.77□□□□□ -0.53
COL6A3-203ENST00000353578 OR51M1Q9H341 326 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 DDX31Q9H8H2 851 aaKnown RBP11.77□□□□□ -0.53
COL6A3-203ENST00000353578 IGSF5Q9NSI5 407 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 MIOXQ9UGB7 285 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 URGCP-MRPS24S4R325 110 aa11.77□□□□□ -0.53
COL6A3-203ENST00000353578 GPR31O00270 319 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms