RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 TVP23BQ9NYZ1 205 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 PTTG2Q9NZH5 202 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 IGKV1D-42A0A075B6H8 117 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 A0A0J9YW62 118 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 TRIM3O75382 744 aaPredicted RBP8.29□□□□□ -1.08
USP4-202ENST00000351842 PPP1R3DO95685 299 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 DIO1P49895 249 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 NUDT6P53370 316 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 SIRPAP78324 504 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 MYBPC1Q00872 1141 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 EEF1A1P5Q5VTE0 462 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 MISPQ8IVT2 679 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 ZNF440Q8IYI8 595 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 FANK1Q8TC84 345 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 ABHD3Q8WU67 409 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 SGTBQ96EQ0 304 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 PIGQQ9BRB3 760 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 TSSK6Q9BXA6 273 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 C12orf49Q9H741 205 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 VCX3AQ9NNX9 186 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 ZNF346Q9UL40 294 aaKnown RBP8.29□□□□□ -1.08
USP4-202ENST00000351842 PAIP2BQ9ULR5 123 aaKnown RBP8.29□□□□□ -1.08
USP4-202ENST00000351842 RABL2BQ9UNT1 228 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 PCDHGB5Q9Y5G0 923 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 TACC2O95359 2948 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 DOPEY2Q9Y3R5 2298 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 A0A087WUJ7 227 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 A0A1W2PRQ8 180 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 SH3D21A4FU49 640 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 ZNF814B7Z6K7 855 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 TNFAIP8O95379 198 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 SLC2A10O95528 541 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 ABOP16442 354 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 BMP7P18075 431 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 IL5RAQ01344 420 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 POU3F1Q03052 451 aaPredicted RBP8.29□□□□□ -1.08
USP4-202ENST00000351842 DGCR6Q14129 220 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 PON3Q15166 354 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 HBMQ6B0K9 141 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 C3orf33Q6P1S2 294 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 ZNF613Q6PF04 617 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 SHQ1Q6PI26 577 aaKnown RBP8.29□□□□□ -1.08
USP4-202ENST00000351842 THSD4Q6ZMP0 1018 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 TRILQ7L0X0 811 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 HIPK1Q86Z02 1210 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 PIK3C3Q8NEB9 887 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 OSTF1Q92882 214 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 ABTB1Q969K4 478 aaPredicted RBP8.29□□□□□ -1.08
USP4-202ENST00000351842 SLC25A18Q9H1K4 315 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 FN3KQ9H479 309 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 MED20Q9H944 212 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 TINAGQ9UJW2 476 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 MED12LQ86YW9 2145 aa8.29□□□□□ -1.08
USP4-202ENST00000351842 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 MCIDASD6RGH6 385 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 DPM1O60762 260 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 SEC14L2O76054 403 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 THRBP10828 461 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 PER3P56645 1201 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 SMIM11AP58511 58 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 RPS7P62081 194 aaKnown RBP8.28□□□□□ -1.08
USP4-202ENST00000351842 LTBQ06643 244 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.28□□□□□ -1.08
USP4-202ENST00000351842 KLHL12Q53G59 568 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 GRAMD2AQ8IUY3 354 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 RPRMLQ8N4K4 120 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 CNEP1R1Q8N9A8 125 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 FAM71CQ8NEG0 241 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 OR4K13Q8NH42 304 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 OR10D3Q8NH80 312 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 RASD2Q96D21 266 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 UCK2Q9BZX2 261 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 AP4B1Q9Y6B7 739 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 LRBAP50851 2863 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 ANKHD1Q8IWZ3 2542 aaKnown RBP8.28□□□□□ -1.08
USP4-202ENST00000351842 FAAHO00519 579 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 IFI6P09912 130 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 SRD5A2P31213 254 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 CARD18P57730 90 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 MBOAT2Q6ZWT7 520 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 PAPD5Q8NDF8 572 aaKnown RBP8.28□□□□□ -1.08
USP4-202ENST00000351842 OR9Q1Q8NGQ5 310 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 SMAP2Q8WU79 429 aaPredicted RBP8.28□□□□□ -1.08
USP4-202ENST00000351842 TSSK2Q96PF2 358 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 TRIB1Q96RU8 372 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 OR51V1Q9H2C8 321 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 CALHM2Q9HA72 323 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 SH2D2AQ9NP31 389 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 IMPAD1Q9NX62 359 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 SPRR3Q9UBC9 169 aa8.28□□□□□ -1.08
USP4-202ENST00000351842 A8MVM7 634 aa8.27□□□□□ -1.08
USP4-202ENST00000351842 PNMTP11086 282 aa8.27□□□□□ -1.08
USP4-202ENST00000351842 ALDH3B2P48448 385 aa8.27□□□□□ -1.08
USP4-202ENST00000351842 LGALS3BPQ08380 585 aa8.27□□□□□ -1.08
USP4-202ENST00000351842 CD47Q08722 323 aa8.27□□□□□ -1.08
USP4-202ENST00000351842 C1DQ13901 141 aaKnown RBP8.27□□□□□ -1.08
USP4-202ENST00000351842 GFRALQ6UXV0 394 aa8.27□□□□□ -1.08
USP4-202ENST00000351842 PIWIL3Q7Z3Z3 882 aaKnown RBP8.27□□□□□ -1.08
USP4-202ENST00000351842 P4HA3Q7Z4N8 544 aa8.27□□□□□ -1.08
USP4-202ENST00000351842 FAM109AQ8N4B1 249 aa8.27□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms