RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 RAB3BP20337 219 aa17.67■□□□□ 0.42
COL9A3-201ENST00000343916 TALDO1P37837 337 aa17.67■□□□□ 0.42
COL9A3-201ENST00000343916 CDKN2AP42771 156 aaKnown RBP17.67■□□□□ 0.42
COL9A3-201ENST00000343916 RPL6Q02878 288 aaKnown RBP17.67■□□□□ 0.42
COL9A3-201ENST00000343916 TDGQ13569 410 aa17.67■□□□□ 0.42
COL9A3-201ENST00000343916 GGTLC2Q14390 218 aa17.67■□□□□ 0.42
COL9A3-201ENST00000343916 MZT2BQ6NZ67 158 aa17.67■□□□□ 0.42
COL9A3-201ENST00000343916 LEG1Q6P5S2 330 aa17.67■□□□□ 0.42
COL9A3-201ENST00000343916 TPRA1Q86W33 373 aa17.67■□□□□ 0.42
COL9A3-201ENST00000343916 TMEM151BQ8IW70 566 aa17.67■□□□□ 0.42
COL9A3-201ENST00000343916 MS4A15Q8N5U1 240 aa17.67■□□□□ 0.42
COL9A3-201ENST00000343916 OR4D9Q8NGE8 314 aa17.67■□□□□ 0.42
COL9A3-201ENST00000343916 OR5H6Q8NGV6 325 aa17.67■□□□□ 0.42
COL9A3-201ENST00000343916 OR14A16Q8NHC5 309 aa17.67■□□□□ 0.42
COL9A3-201ENST00000343916 FOXQ1Q9C009 403 aa17.67■□□□□ 0.42
COL9A3-201ENST00000343916 TRBV2A0A0J9YWF9 115 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 FITM1A5D6W6 292 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 RHPN2P1A8MT19 583 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.66■□□□□ 0.42
COL9A3-201ENST00000343916 SCDO00767 359 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 UTS2O95399 124 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 F13BP05160 661 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 TRAPPC2P0DI81 140 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 TRAPPC2BP0DI82 140 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 CSNK1EP49674 416 aaKnown RBP17.66■□□□□ 0.42
COL9A3-201ENST00000343916 GBX2P52951 348 aaPredicted RBP17.66■□□□□ 0.42
COL9A3-201ENST00000343916 RAB25P57735 213 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 OR1D5P58170 312 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 RPS11P62280 158 aaKnown RBP eCLIP17.66■□□□□ 0.42
COL9A3-201ENST00000343916 ACTA2P62736 377 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 ACTG2P63267 376 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 EGR4Q05215 589 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 CDONQ4KMG0 1287 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 WBP2NLQ6ICG8 309 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 ATG4DQ86TL0 474 aaPredicted RBP17.66■□□□□ 0.42
COL9A3-201ENST00000343916 C17orf82Q86X59 251 aaPredicted RBP17.66■□□□□ 0.42
COL9A3-201ENST00000343916 FAM174AQ8TBP5 190 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 ABHD1Q96SE0 405 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 NCDNQ9UBB6 729 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 RNF215Q9Y6U7 377 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 ARPC3O15145 178 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 OGG1O15527 345 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 MYF5P13349 255 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 EDNRAP25101 427 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 GRK6P43250 576 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 SF3A2Q15428 464 aaKnown RBP17.66■□□□□ 0.42
COL9A3-201ENST00000343916 ZNF74Q16587 644 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 CCDC58Q4VC31 144 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 YIF1BQ5BJH7 314 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 GPR135Q8IZ08 494 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 ZNF527Q8NB42 609 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 DUSP18Q8NEJ0 188 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 KCTD12Q96CX2 325 aaKnown RBP17.66■□□□□ 0.42
COL9A3-201ENST00000343916 LRFN5Q96NI6 719 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 NANSQ9NR45 359 aa17.66■□□□□ 0.42
COL9A3-201ENST00000343916 OR6C70A6NIJ9 312 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 PRR32B1ATL7 298 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 LMO7DNF2Z398 122 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 ALX3O95076 343 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 SNRPBP14678 240 aaKnown RBP17.65■□□□□ 0.42
COL9A3-201ENST00000343916 MAGEB1P43366 347 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 PRPS1P60891 318 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 LGALS3BPQ08380 585 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 C14orf28Q4W4Y0 310 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 VWA2Q5GFL6 755 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 SYS1Q8N2H4 156 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 ZNF511Q8NB15 262 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 ZDHHC12Q96GR4 267 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 ZC3HAV1LQ96H79 300 aaKnown RBP17.65■□□□□ 0.42
COL9A3-201ENST00000343916 THAP7Q9BT49 309 aaPredicted RBP17.65■□□□□ 0.42
COL9A3-201ENST00000343916 PHF7Q9BWX1 381 aaPredicted RBP17.65■□□□□ 0.42
COL9A3-201ENST00000343916 NMNAT2Q9BZQ4 307 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 SLA2Q9H6Q3 261 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 ALG5Q9Y673 324 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 TRIOBPQ9H2D6 2365 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 A0A087WV48 116 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 H3BMH7 237 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 ZNF264O43296 627 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 IL33O95760 270 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 ATF1P18846 271 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 NPR2P20594 1047 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 PPICP45877 212 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 PITPNBP48739 271 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 AGFG1P52594 562 aaKnown RBP17.65■□□□□ 0.42
COL9A3-201ENST00000343916 LTBQ06643 244 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 POMZP3Q6PJE2 187 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 OR7G1Q8NGA0 311 aa17.65■□□□□ 0.42
COL9A3-201ENST00000343916 GFM1Q96RP9 751 aaKnown RBP17.65■□□□□ 0.42
COL9A3-201ENST00000343916 AK6Q9Y3D8 172 aaKnown RBP17.65■□□□□ 0.42
COL9A3-201ENST00000343916 H7C1C5 153 aa17.64■□□□□ 0.42
COL9A3-201ENST00000343916 EEF1E1O43324 174 aaKnown RBP17.64■□□□□ 0.42
COL9A3-201ENST00000343916 FZD7O75084 574 aa17.64■□□□□ 0.42
COL9A3-201ENST00000343916 CPNE3O75131 537 aaKnown RBP17.64■□□□□ 0.42
COL9A3-201ENST00000343916 ICOSLGO75144 302 aa17.64■□□□□ 0.42
COL9A3-201ENST00000343916 SRP9P49458 86 aaKnown RBP17.64■□□□□ 0.42
COL9A3-201ENST00000343916 HNRNPKP61978 463 aaKnown RBP eCLIP17.64■□□□□ 0.426e-7■■■■■ 38.6
COL9A3-201ENST00000343916 LCN6P62502 163 aa17.64■□□□□ 0.42
COL9A3-201ENST00000343916 ZP2Q05996 745 aa17.64■□□□□ 0.42
COL9A3-201ENST00000343916 RNASE12Q5GAN4 147 aaKnown RBP17.64■□□□□ 0.42
COL9A3-201ENST00000343916 ESPNLQ6ZVH7 1005 aa17.64■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms