RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 RTL10Q7L3V2 364 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 SPICQ8N5J4 248 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 ZNF350Q9GZX5 532 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 TAS2R5Q9NYW4 299 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 GPR160Q9UJ42 338 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 ZNF346Q9UL40 294 aaKnown RBP20.54■□□□□ 0.88
TRIM28-202ENST00000341753 FOXJ3Q9UPW0 622 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 BAIAP2Q9UQB8 552 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 TUBAL3A6NHL2 446 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 ADAM11O75078 769 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 KAT7O95251 611 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 PRKACAP17612 351 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 FCARP24071 287 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 AP3S2P59780 193 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 PPP2CBP62714 309 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 PPP2CAP67775 309 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 AGBL4Q5VU57 503 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 OR2L13Q8N349 312 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 COX18Q8N8Q8 333 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 OR6K6Q8NGW6 343 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 ZPLD1Q8TCW7 415 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 FLRT3Q9NZU0 649 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 OR5V1Q9UGF6 321 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 IER3IP1Q9Y5U9 82 aa20.54■□□□□ 0.88
TRIM28-202ENST00000341753 MUC22E2RYF6 1773 aaPredicted RBP20.54■□□□□ 0.88
TRIM28-202ENST00000341753 ANKRD20A5PA0PJZ0 165 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 LRRC72A6NJI9 287 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 LDB3O75112 727 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 ZNF35P13682 527 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 TYRP1P17643 537 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 EXOSC7Q15024 291 aaKnown RBP20.53■□□□□ 0.88
TRIM28-202ENST00000341753 ELFN2Q5R3F8 820 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 RPL13AP3Q6NVV1 102 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 PSRC1Q6PGN9 363 aaPredicted RBP20.53■□□□□ 0.88
TRIM28-202ENST00000341753 KXD1Q9BQD3 176 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 AKAP7Q9P0M2 348 aaPredicted RBP20.53■□□□□ 0.88
TRIM28-202ENST00000341753 NCDNQ9UBB6 729 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 GXYLT2A0PJZ3 443 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 ZNF879B4DU55 563 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 AIPO00170 330 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 KDM4BO94953 1096 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 RPP14O95059 124 aaKnown RBP20.53■□□□□ 0.88
TRIM28-202ENST00000341753 IFNA16P05015 189 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 DBIP07108 87 aaKnown RBP20.53■□□□□ 0.88
TRIM28-202ENST00000341753 THBS1P07996 1170 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 NANOS3P60323 173 aaKnown RBP20.53■□□□□ 0.88
TRIM28-202ENST00000341753 IRF4Q15306 451 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 OR4K14Q8NGD5 310 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 ZDHHC1Q8WTX9 485 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 ZNF275Q9NSD4 429 aaPredicted RBP20.53■□□□□ 0.88
TRIM28-202ENST00000341753 HAO2Q9NYQ3 351 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 ACSL5Q9ULC5 683 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 VCANP13611 3396 aa20.53■□□□□ 0.88
TRIM28-202ENST00000341753 A8MXK9 166 aa20.52■□□□□ 0.88
TRIM28-202ENST00000341753 IGF2P01344 180 aa20.52■□□□□ 0.88
TRIM28-202ENST00000341753 RLN1P04808 185 aa20.52■□□□□ 0.88
TRIM28-202ENST00000341753 SOX2P48431 317 aa20.52■□□□□ 0.88
TRIM28-202ENST00000341753 ARHGDIBP52566 201 aa20.52■□□□□ 0.88
TRIM28-202ENST00000341753 PDGFRLQ15198 375 aa20.52■□□□□ 0.88
TRIM28-202ENST00000341753 CSRP2Q16527 193 aa20.52■□□□□ 0.88
TRIM28-202ENST00000341753 DCAF12L2Q5VW00 463 aa20.52■□□□□ 0.88
TRIM28-202ENST00000341753 OR7E24Q6IFN5 339 aa20.52■□□□□ 0.88
TRIM28-202ENST00000341753 RPL22L1Q6P5R6 122 aaKnown RBP20.52■□□□□ 0.88
TRIM28-202ENST00000341753 TFAP2EQ6VUC0 442 aa20.52■□□□□ 0.88
TRIM28-202ENST00000341753 C17orf107Q6ZR85 190 aa20.52■□□□□ 0.88
TRIM28-202ENST00000341753 OVCH2Q7RTZ1 564 aa20.52■□□□□ 0.88
TRIM28-202ENST00000341753 VN1R4Q7Z5H5 301 aa20.52■□□□□ 0.88
TRIM28-202ENST00000341753 HERVK_113Q902F9 699 aa20.52■□□□□ 0.88
TRIM28-202ENST00000341753 S100A16Q96FQ6 103 aaKnown RBP20.52■□□□□ 0.88
TRIM28-202ENST00000341753 RPP25Q9BUL9 199 aaKnown RBP20.52■□□□□ 0.88
TRIM28-202ENST00000341753 SPDEFO95238 335 aa20.52■□□□□ 0.87
TRIM28-202ENST00000341753 IFNGP01579 166 aa20.52■□□□□ 0.87
TRIM28-202ENST00000341753 CBFBQ13951 182 aa20.52■□□□□ 0.87
TRIM28-202ENST00000341753 C2orf27AQ580R0 203 aa20.52■□□□□ 0.87
TRIM28-202ENST00000341753 PWWP2BQ6NUJ5 590 aa20.52■□□□□ 0.87
TRIM28-202ENST00000341753 LRFN4Q6PJG9 635 aa20.52■□□□□ 0.87
TRIM28-202ENST00000341753 RELL2Q8NC24 303 aaPredicted RBP20.52■□□□□ 0.87
TRIM28-202ENST00000341753 OR4E2Q8NGC2 313 aa20.52■□□□□ 0.87
TRIM28-202ENST00000341753 RGP1Q92546 391 aaPredicted RBP20.52■□□□□ 0.87
TRIM28-202ENST00000341753 NMNAT3Q96T66 252 aa20.52■□□□□ 0.87
TRIM28-202ENST00000341753 GPN1Q9HCN4 374 aaPredicted RBP20.52■□□□□ 0.87
TRIM28-202ENST00000341753 A0A1B0GWA3 101 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 NAP1L6A6NFF2 107 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 C4orf47A7E2U8 309 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 PRR32B1ATL7 298 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 MCIDASD6RGH6 385 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 C5orf67F2Z3F1 127 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 OR2A4O95047 310 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 APOC3P02656 99 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 OR2T7P0C7T2 308 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 CPN1P15169 458 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 ACTA2P62736 377 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 ACTG2P63267 376 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 FHL1Q13642 323 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 MFSD9Q8NBP5 474 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 OR2T27Q8NH04 317 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 SCARB1Q8WTV0 552 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 MARC2Q969Z3 335 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 HSPA12BQ96MM6 686 aa20.51■□□□□ 0.87
TRIM28-202ENST00000341753 OR2A7Q96R45 310 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms