RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 SLC22A2O15244 555 aa7.69□□□□□ -1.18
HMGB1-203ENST00000341423 CNOT4O95628 575 aaKnown RBP7.69□□□□□ -1.18
HMGB1-203ENST00000341423 MAP2K3P46734 347 aa7.69□□□□□ -1.18
HMGB1-203ENST00000341423 ZNF844Q08AG5 666 aa7.69□□□□□ -1.18
HMGB1-203ENST00000341423 RAB31Q13636 194 aa7.69□□□□□ -1.18
HMGB1-203ENST00000341423 PTPRRQ15256 657 aa7.69□□□□□ -1.18
HMGB1-203ENST00000341423 PRAMEF17Q5VTA0 474 aa7.69□□□□□ -1.18
HMGB1-203ENST00000341423 MARCH3Q86UD3 253 aa7.69□□□□□ -1.18
HMGB1-203ENST00000341423 NT5C3BQ969T7 300 aa7.69□□□□□ -1.18
HMGB1-203ENST00000341423 NSL1Q96IY1 281 aa7.69□□□□□ -1.18
HMGB1-203ENST00000341423 FAM71F1Q96KD3 344 aaPredicted RBP7.69□□□□□ -1.18
HMGB1-203ENST00000341423 S1PR3Q99500 378 aa7.69□□□□□ -1.18
HMGB1-203ENST00000341423 CXorf21Q9HAI6 301 aa7.69□□□□□ -1.18
HMGB1-203ENST00000341423 HDGFL3Q9Y3E1 203 aa7.69□□□□□ -1.18
HMGB1-203ENST00000341423 SSC5DA1L4H1 1573 aa7.69□□□□□ -1.18
HMGB1-203ENST00000341423 FABP3P05413 133 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 CRHBPP24387 322 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 ERVK-25P63136 954 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 SFXN4Q6P4A7 337 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 UBE2Q1Q7Z7E8 422 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 BHLHE23Q8NDY6 225 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 SMAP2Q8WU79 429 aaPredicted RBP7.68□□□□□ -1.18
HMGB1-203ENST00000341423 NEIL2Q969S2 332 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 ZNF184Q99676 751 aaPredicted RBP7.68□□□□□ -1.18
HMGB1-203ENST00000341423 ITPAQ9BY32 194 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 SLCO5A1Q9H2Y9 848 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 VNN3Q9NY84 501 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 MN1Q10571 1320 aaPredicted RBP7.68□□□□□ -1.18
HMGB1-203ENST00000341423 hCG_2039718K7EN88 272 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 FAHP16930 419 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 YAP1P46937 504 aaKnown RBP7.68□□□□□ -1.18
HMGB1-203ENST00000341423 RAC1P63000 192 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 GPR139Q6DWJ6 353 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 ULK3Q6PHR2 472 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 RDH10Q8IZV5 341 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 SIMC1Q8NDZ2 872 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 OR13D1Q8NGV5 346 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 ST8SIA1Q92185 356 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 MRPS26Q9BYN8 205 aaKnown RBP7.68□□□□□ -1.18
HMGB1-203ENST00000341423 CHRNA9Q9UGM1 479 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 TRAPPC2LQ9UL33 140 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 SDK2Q58EX2 2172 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 A0A0G2JPF8 293 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 BBIP1A8MTZ0 92 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 HNRNPCL3B7ZW38 293 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 HNRNPCL4P0DMR1 293 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 OR5H8P0DN80 308 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 UNGP13051 313 aaPredicted RBP7.68□□□□□ -1.18
HMGB1-203ENST00000341423 PEX2P28328 305 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 TGFBR2P37173 567 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 ECI1P42126 302 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 DPY19L4Q7Z388 723 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 OR7G3Q8NG95 312 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 FANK1Q8TC84 345 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 SNX18Q96RF0 628 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 CIB1Q99828 191 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 SORBS1Q9BX66 1292 aaKnown RBP7.68□□□□□ -1.18
HMGB1-203ENST00000341423 DOPEY1Q5JWR5 2465 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 TRAPPC13A5PLN9 417 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 MROH6A6NGR9 719 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 TUSC2O75896 110 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 ADAP00813 363 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 VSIG10L2P0DP72 767 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 MAPK3P27361 379 aaPredicted RBP7.68□□□□□ -1.18
HMGB1-203ENST00000341423 CD96P40200 585 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 AKR1C2P52895 323 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 CXorf66Q5JRM2 361 aaPredicted RBP7.68□□□□□ -1.18
HMGB1-203ENST00000341423 ANKRD13BQ86YJ7 626 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 TCP10LQ8TDR4 215 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 TNFRSF13CQ96RJ3 184 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 GPR22Q99680 433 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 SLC22A11Q9NSA0 550 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 TMEFF2Q9UIK5 374 aaPredicted RBP7.68□□□□□ -1.18
HMGB1-203ENST00000341423 PKD1L2Q7Z442 2459 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 TCF20Q9UGU0 1960 aaKnown RBP7.68□□□□□ -1.18
HMGB1-203ENST00000341423 TCRBV9S1A1TA0A576 114 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 SERINC4A6NH21 518 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 M0QX08 132 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 ANKRD34CP0C6C1 535 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 T-ENOLP0DO92 83 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 ITGAMP11215 1152 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 GNG2P59768 71 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 GNB1P62873 340 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 RFX4Q33E94 735 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 SMIM21Q3B7S5 101 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 PYHIN1Q6K0P9 492 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 ASRGL1Q7L266 308 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 TPT1P8Q9HAU6 139 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 DIABLOQ9NR28 239 aa7.68□□□□□ -1.18
HMGB1-203ENST00000341423 NCOR2Q9Y618 2525 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 A0A1W2PRQ8 180 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 SMCO3A2RU48 225 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 SYT7O43581 403 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 CBX6O95503 412 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 C19orf18Q8NEA5 215 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 Q96MF0 132 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 SYT3Q9BQG1 590 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 PNPOQ9NVS9 261 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 SIRT5Q9NXA8 310 aa7.67□□□□□ -1.18
HMGB1-203ENST00000341423 ENPP5Q9UJA9 477 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms