RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 ALG8Q9BVK2 526 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 C14orf166Q9Y224 244 aaKnown RBP9.31□□□□□ -0.92
USP54-201ENST00000339859 OR6C70A6NIJ9 312 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 SURF4O15260 269 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 DHFRP00374 187 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 ABCD3P28288 659 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 PRKXP51817 358 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 CDH15P55291 814 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 RAB11BQ15907 218 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 TMEM236Q5W0B7 351 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 STK35Q8TDR2 534 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 NKX1-2Q9UD57 310 aaPredicted RBP9.31□□□□□ -0.92
USP54-201ENST00000339859 TCRBV3S1A0A5B6 114 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 APOL3O95236 402 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 PLATP00750 562 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 FGF5P12034 268 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 RGS19P49795 217 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 EIF2S3LQ2VIR3 472 aaKnown RBP9.31□□□□□ -0.92
USP54-201ENST00000339859 AWAT2Q6E213 333 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 VN1R4Q7Z5H5 301 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 CNRIP1Q96F85 164 aaPredicted RBP9.31□□□□□ -0.92
USP54-201ENST00000339859 ZNF583Q96ND8 569 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 DNTTIP1Q9H147 329 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 MYOTQ9UBF9 498 aa9.31□□□□□ -0.92
USP54-201ENST00000339859 MITFO75030 526 aaPredicted RBP9.3□□□□□ -0.92
USP54-201ENST00000339859 SCGNO76038 276 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 SOD1P00441 154 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 TMEM225BP0DP42 221 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 CELP19835 753 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 FPR3P25089 353 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 ZNF169Q14929 603 aaPredicted RBP9.3□□□□□ -0.92
USP54-201ENST00000339859 SPRED3Q2MJR0 410 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 C6orf141Q5SZD1 244 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 KIF18BQ86Y91 864 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 PIAS4Q8N2W9 510 aaPredicted RBP9.3□□□□□ -0.92
USP54-201ENST00000339859 OR2L13Q8N349 312 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 OR51L1Q8NGJ5 315 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 NUBPLQ8TB37 319 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 TNFRSF13CQ96RJ3 184 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 MED18Q9BUE0 208 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 BCL2L10Q9HD36 194 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 ABRACLQ9P1F3 81 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 PCDHGA10Q9Y5H3 936 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 MN1Q10571 1320 aaPredicted RBP9.3□□□□□ -0.92
USP54-201ENST00000339859 DISC1C4P0D8 188 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 RFC3P40938 356 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 MS4A2Q01362 244 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 KCTD20Q7Z5Y7 419 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 MEX3DQ86XN8 651 aaKnown RBP9.3□□□□□ -0.92
USP54-201ENST00000339859 OIT3Q8WWZ8 545 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 MED16Q9Y2X0 877 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 RPL27P61353 136 aaKnown RBP9.3□□□□□ -0.92
USP54-201ENST00000339859 HSF1Q00613 529 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 RAB40BQ12829 278 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 RGS21Q2M5E4 152 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 PRICKLE4Q2TBC4 344 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 MOB3CQ70IA8 216 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 DNAAF1Q8NEP3 725 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 ZFP3Q96NJ6 502 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 ENY2Q9NPA8 101 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 MEMO1Q9Y316 297 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 ATP23Q9Y6H3 246 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 MRPS14O60783 128 aaKnown RBP9.3□□□□□ -0.92
USP54-201ENST00000339859 GABRA1P14867 456 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 NPR2P20594 1047 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 ATP1B3P54709 279 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 RNPS1Q15287 305 aaKnown RBP9.3□□□□□ -0.92
USP54-201ENST00000339859 ATAD3CQ5T2N8 411 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 OGFRL1Q5TC84 451 aaPredicted RBP9.3□□□□□ -0.92
USP54-201ENST00000339859 BAIAP2L2Q6UXY1 529 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 ZNF793Q6ZN11 406 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 MRGPREQ86SM8 312 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 ZNF442Q9H7R0 627 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 APMAPQ9HDC9 416 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 NUFIP1Q9UHK0 495 aaKnown RBP9.3□□□□□ -0.92
USP54-201ENST00000339859 LRRC30A6NM36 301 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 K7ESF4 209 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 FZD7O75084 574 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.3□□□□□ -0.92
USP54-201ENST00000339859 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.3□□□□□ -0.92
USP54-201ENST00000339859 GINS4Q9BRT9 223 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 SIP14410 1827 aa9.3□□□□□ -0.92
USP54-201ENST00000339859 TVP23AA6NH52 213 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 C19orf67A6NJJ6 358 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 CXCL13O43927 109 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 KIAA0513O60268 411 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 SBK3P0C264 359 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 CSRP1P21291 193 aaKnown RBP9.29□□□□□ -0.92
USP54-201ENST00000339859 GRB2P62993 217 aaKnown RBP9.29□□□□□ -0.92
USP54-201ENST00000339859 CHRFAM7AQ494W8 412 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 ZMAT1Q5H9K5 638 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 RNF220Q5VTB9 566 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 ZNF782Q6ZMW2 699 aaPredicted RBP9.29□□□□□ -0.92
USP54-201ENST00000339859 FAM57BQ71RH2 274 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 RETREG3Q86VR2 466 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 OR11G2Q8NGC1 345 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 CCDC107Q8WV48 283 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 INTS12Q96CB8 462 aaKnown RBP9.29□□□□□ -0.92
USP54-201ENST00000339859 EGLN1Q9GZT9 426 aa9.29□□□□□ -0.92
USP54-201ENST00000339859 ATG5Q9H1Y0 275 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms