RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 SAR1AQ9NR31 198 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 UPB1Q9UBR1 384 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 SLC13A4Q9UKG4 626 aa14.35□□□□□ -0.11
LSM1-201ENST00000311351 CBLP22681 906 aa14.34□□□□□ -0.11
LSM1-201ENST00000311351 GTF2E2P29084 291 aaKnown RBP14.34□□□□□ -0.11
LSM1-201ENST00000311351 SELENOPP49908 381 aa14.34□□□□□ -0.11
LSM1-201ENST00000311351 LGALS3BPQ08380 585 aa14.34□□□□□ -0.11
LSM1-201ENST00000311351 GABRA6Q16445 453 aa14.34□□□□□ -0.11
LSM1-201ENST00000311351 SNX32Q86XE0 403 aa14.34□□□□□ -0.11
LSM1-201ENST00000311351 KDM8Q8N371 416 aa14.34□□□□□ -0.11
LSM1-201ENST00000311351 ZNF611Q8N823 705 aa14.34□□□□□ -0.11
LSM1-201ENST00000311351 MUCL1Q96DR8 90 aa14.34□□□□□ -0.11
LSM1-201ENST00000311351 ARHGDIGQ99819 225 aa14.34□□□□□ -0.11
LSM1-201ENST00000311351 SLCO5A1Q9H2Y9 848 aa14.34□□□□□ -0.11
LSM1-201ENST00000311351 CCDC134Q9H6E4 229 aa14.34□□□□□ -0.11
LSM1-201ENST00000311351 C12orf10Q9HB07 376 aa14.34□□□□□ -0.11
LSM1-201ENST00000311351 DLL4Q9NR61 685 aa14.34□□□□□ -0.11
LSM1-201ENST00000311351 PARPBPQ9NWS1 579 aa14.34□□□□□ -0.11
LSM1-201ENST00000311351 NF1P21359 2839 aa14.33□□□□□ -0.11
LSM1-201ENST00000311351 A0A0B4J2E0 115 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 A0A1B0GX12 115 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 M0QX08 132 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 M0R082 166 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 MRASO14807 208 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 PCGF2P35227 344 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 GZMMP51124 257 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 ZNF83P51522 516 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 SLC25A3Q00325 362 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 SPOCK1Q08629 439 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 OR1Q1Q15612 314 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 NPTX1Q15818 432 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 NRF1Q16656 503 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 DUSP7Q16829 419 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 NANOGP8Q6NSW7 305 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 ULK3Q6PHR2 472 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 CREB3L2Q70SY1 520 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 RANBP3LQ86VV4 465 aaPredicted RBP14.33□□□□□ -0.12
LSM1-201ENST00000311351 P2RY8Q86VZ1 359 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 EPHX4Q8IUS5 362 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 LRRC75A-AS1Q8N1F1 130 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 BHLHE22Q8NFJ8 381 aaPredicted RBP14.33□□□□□ -0.12
LSM1-201ENST00000311351 OR4D11Q8NGI4 311 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 ZNF417Q8TAU3 575 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 DNAJA4Q8WW22 397 aaPredicted RBP14.33□□□□□ -0.12
LSM1-201ENST00000311351 SLC38A4Q969I6 547 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 TAAR8Q969N4 342 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 TAMM41Q96BW9 452 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 ALKBH3Q96Q83 286 aaPredicted RBP14.33□□□□□ -0.12
LSM1-201ENST00000311351 ZNF587Q96SQ5 575 aaPredicted RBP14.33□□□□□ -0.12
LSM1-201ENST00000311351 NANOGQ9H9S0 305 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 KLHL14Q9P2G3 628 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 USP22Q9UPT9 525 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 RASD1Q9Y272 281 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 SLC25A15Q9Y619 301 aa14.33□□□□□ -0.12
LSM1-201ENST00000311351 TRAV36DV7A0A075B6V5 113 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 ABCD4O14678 606 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 FZD7O75084 574 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 VAMP5O95183 116 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 LGI1O95970 557 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 CD247P20963 164 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 GRPRP30550 384 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 PTH2RP49190 550 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 CRYBA2P53672 197 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 VMACQ2NL98 169 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 MMEL1Q495T6 779 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 ZNF672Q499Z4 452 aaPredicted RBP14.32□□□□□ -0.12
LSM1-201ENST00000311351 FAM69AQ5T7M9 428 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 SHEQ5VZ18 495 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 FAM91A1Q658Y4 838 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 NIPAL3Q6P499 406 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 RBM45Q8IUH3 476 aaKnown RBP14.32□□□□□ -0.12
LSM1-201ENST00000311351 OR6T1Q8NGN1 323 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 VANGL1Q8TAA9 524 aaPredicted RBP14.32□□□□□ -0.12
LSM1-201ENST00000311351 TMEM171Q8WVE6 324 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 C10orf82Q8WW14 230 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 FBXW5Q969U6 566 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 LRRC58Q96CX6 371 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 SLC47A1Q96FL8 570 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 MUS81Q96NY9 551 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 MCHR1Q99705 422 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 AMBRA1Q9C0C7 1298 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 TMEM27Q9HBJ8 222 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 ARMCX1Q9P291 453 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 B3GAT1Q9P2W7 334 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 LAMP3Q9UQV4 416 aa14.32□□□□□ -0.12
LSM1-201ENST00000311351 HEATR1Q9H583 2144 aaKnown RBP14.32□□□□□ -0.12
LSM1-201ENST00000311351 A0A087WUJ7 227 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 LOC100653049A0A140TA62 436 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 CPSF4LA6NMK7 179 aaKnown RBP14.31□□□□□ -0.12
LSM1-201ENST00000311351 SHISA9B4DS77 424 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 LRRN3E7EW58 273 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 M0R1B8 84 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 KRT34O76011 436 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 CDH2P19022 906 aaPredicted RBP14.31□□□□□ -0.12
LSM1-201ENST00000311351 MPGP29372 298 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 MDH1P40925 334 aaKnown RBP14.31□□□□□ -0.12
LSM1-201ENST00000311351 CDH12P55289 794 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 CYLC2Q14093 348 aaPredicted RBP14.31□□□□□ -0.12
LSM1-201ENST00000311351 COQ5Q5HYK3 327 aa14.31□□□□□ -0.12
LSM1-201ENST00000311351 C5orf46Q6UWT4 87 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms