RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 HIKESHIQ53FT3 197 aa17.11■□□□□ 0.33
LIME1-201ENST00000309546 NIPAL3Q6P499 406 aa17.11■□□□□ 0.33
LIME1-201ENST00000309546 ABHD12BQ7Z5M8 362 aaPredicted RBP17.11■□□□□ 0.33
LIME1-201ENST00000309546 THOC1Q96FV9 657 aaKnown RBP17.11■□□□□ 0.33
LIME1-201ENST00000309546 ALKBH3Q96Q83 286 aaPredicted RBP17.11■□□□□ 0.33
LIME1-201ENST00000309546 DHRS9Q9BPW9 319 aa17.11■□□□□ 0.33
LIME1-201ENST00000309546 CACNG6Q9BXT2 260 aa17.11■□□□□ 0.33
LIME1-201ENST00000309546 INTS9Q9NV88 658 aaKnown RBP17.11■□□□□ 0.33
LIME1-201ENST00000309546 B3GALT5Q9Y2C3 310 aa17.11■□□□□ 0.33
LIME1-201ENST00000309546 ATP23Q9Y6H3 246 aa17.11■□□□□ 0.33
LIME1-201ENST00000309546 PLCE1Q9P212 2302 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 SSX4O60224 188 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 NPIPB7O75200 414 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 VAMP5O95183 116 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 WNT11O96014 354 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 PNMTP11086 282 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 TTKP33981 857 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 FABP6P51161 128 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 PRPS1P60891 318 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 CDK6Q00534 326 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 REEP3Q6NUK4 255 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 CREB3L2Q70SY1 520 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 KRT73Q86Y46 540 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 FBXL14Q8N1E6 418 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 KDM8Q8N371 416 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 MFSD8Q8NHS3 518 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 RNF217Q8TC41 542 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 SLC35B4Q969S0 331 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 KTI12Q96EK9 354 aaPredicted RBP17.1■□□□□ 0.33
LIME1-201ENST00000309546 PTDSS2Q9BVG9 487 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 SPATA5L1Q9BVQ7 753 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 REG4Q9BYZ8 158 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 IKZF5Q9H5V7 419 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 PIF1Q9H611 641 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 BARX1Q9HBU1 254 aaPredicted RBP17.1■□□□□ 0.33
LIME1-201ENST00000309546 RASD1Q9Y272 281 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 CSPG4Q6UVK1 2322 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 TLN2Q9Y4G6 2542 aa17.1■□□□□ 0.33
LIME1-201ENST00000309546 ZNF587BE7ETH6 402 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 LGI1O95970 557 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 HTR2AP28223 471 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 AQP1P29972 269 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 ATP4BP51164 291 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 NCALDP61601 193 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 EGR4Q05215 589 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 SCARB2Q14108 478 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 NRF1Q16656 503 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 COMTD1Q86VU5 262 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 EPHX4Q8IUS5 362 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 MUC15Q8N387 334 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 ADAD1Q96M93 576 aaKnown RBP17.09■□□□□ 0.33
LIME1-201ENST00000309546 GRIP2Q9C0E4 1043 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 FKRPQ9H9S5 495 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 SLC52A3Q9NQ40 469 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 CBLN4Q9NTU7 201 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 TMEM45AQ9NWC5 275 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 SEC14L4Q9UDX3 406 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 CORO2BQ9UQ03 480 aa17.09■□□□□ 0.33
LIME1-201ENST00000309546 HIVEP2P31629 2446 aa17.08■□□□□ 0.33
LIME1-201ENST00000309546 TRBV5-3A0A0A0MS03 114 aa17.08■□□□□ 0.32
LIME1-201ENST00000309546 A0A1B0GWA3 101 aa17.08■□□□□ 0.32
LIME1-201ENST00000309546 EVPLLA8MZ36 301 aa17.08■□□□□ 0.32
LIME1-201ENST00000309546 FTCDNL1E5RQL4 147 aa17.08■□□□□ 0.32
LIME1-201ENST00000309546 ATP6V1G2-DDX39BF2Z307 99 aa17.08■□□□□ 0.32
LIME1-201ENST00000309546 NUDT6P53370 316 aa17.08■□□□□ 0.32
LIME1-201ENST00000309546 CLDN17P56750 224 aa17.08■□□□□ 0.32
LIME1-201ENST00000309546 IRX1P78414 480 aaPredicted RBP17.08■□□□□ 0.32
LIME1-201ENST00000309546 IL1RL1Q01638 556 aa17.08■□□□□ 0.32
LIME1-201ENST00000309546 GLIPR1L2Q4G1C9 344 aa17.08■□□□□ 0.32
LIME1-201ENST00000309546 ALG10BQ5I7T1 473 aa17.08■□□□□ 0.32
LIME1-201ENST00000309546 DHRS4L2Q6PKH6 230 aa17.08■□□□□ 0.32
LIME1-201ENST00000309546 OR1K1Q8NGR3 316 aa17.08■□□□□ 0.32
LIME1-201ENST00000309546 HTRA1Q92743 480 aa17.08■□□□□ 0.32
LIME1-201ENST00000309546 PRR14Q9BWN1 585 aa17.08■□□□□ 0.32
LIME1-201ENST00000309546 RSPO3Q9BXY4 272 aaPredicted RBP17.08■□□□□ 0.32
LIME1-201ENST00000309546 SLC13A4Q9UKG4 626 aa17.08■□□□□ 0.32
LIME1-201ENST00000309546 HMGB1P1B2RPK0 211 aaPredicted RBP17.07■□□□□ 0.32
LIME1-201ENST00000309546 TPST1O60507 370 aa17.07■□□□□ 0.32
LIME1-201ENST00000309546 UPK3AO75631 287 aa17.07■□□□□ 0.32
LIME1-201ENST00000309546 ZNF43P17038 809 aa17.07■□□□□ 0.32
LIME1-201ENST00000309546 CBLP22681 906 aa17.07■□□□□ 0.32
LIME1-201ENST00000309546 SLC6A2P23975 617 aa17.07■□□□□ 0.32
LIME1-201ENST00000309546 RGS8P57771 180 aaPredicted RBP17.07■□□□□ 0.32
LIME1-201ENST00000309546 TBRG1Q3YBR2 411 aa17.07■□□□□ 0.32
LIME1-201ENST00000309546 C11orf71Q6IPW1 123 aa17.07■□□□□ 0.32
LIME1-201ENST00000309546 C6orf89Q6UWU4 347 aa17.07■□□□□ 0.32
LIME1-201ENST00000309546 SLC38A4Q969I6 547 aa17.07■□□□□ 0.32
LIME1-201ENST00000309546 ZNF607Q96SK3 696 aa17.07■□□□□ 0.32
LIME1-201ENST00000309546 CPPED1Q9BRF8 314 aaPredicted RBP17.07■□□□□ 0.32
LIME1-201ENST00000309546 RABEP2Q9H5N1 569 aa17.07■□□□□ 0.32
LIME1-201ENST00000309546 C12orf10Q9HB07 376 aa17.07■□□□□ 0.32
LIME1-201ENST00000309546 SELENONQ9NZV5 590 aa17.07■□□□□ 0.32
LIME1-201ENST00000309546 TESQ9UGI8 421 aaKnown RBP17.07■□□□□ 0.32
LIME1-201ENST00000309546 MOKQ9UQ07 419 aa17.07■□□□□ 0.32
LIME1-201ENST00000309546 ANGPT4Q9Y264 503 aa17.07■□□□□ 0.32
LIME1-201ENST00000309546 ZANQ9Y493 2812 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 OR6C65A6NJZ3 312 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 M0R082 166 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 GPX2P18283 190 aa17.06■□□□□ 0.32
LIME1-201ENST00000309546 UBE2NP61088 152 aaKnown RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms