RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 RASL10BQ96S79 203 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 GALNT9Q9HCQ5 603 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 KLHL21Q9UJP4 597 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 HIF3AQ9Y2N7 669 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 ANKUB1A6NFN9 424 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 C4orf47A7E2U8 309 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 SLC25A12O75746 678 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 DLGAP3O95886 979 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 IGHA1P01876 353 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 ASAH2BP0C7U1 165 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 WNT4P56705 351 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 SSX1Q16384 188 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 C19orf48Q6RUI8 117 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 PSD4Q8NDX1 1056 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 M1APQ8TC57 530 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 NRIP3Q9NQ35 241 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 KLRF1Q9NZS2 232 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 TNFRSF10DQ9UBN6 386 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 PCDHGB6Q9Y5F9 930 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 TTC28Q96AY4 2481 aa12.95□□□□□ -0.34
C9orf3-202ENST00000297979 TMED7-TICAM2A0A0A6YYA0 188 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 LIMS3P0CW19 117 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 LIMS4P0CW20 117 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 HIST1H1CP16403 213 aaKnown RBP12.94□□□□□ -0.34
C9orf3-202ENST00000297979 IDUAP35475 653 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 SOX3P41225 446 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 NTRK2Q16620 822 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 TIMM50Q3ZCQ8 353 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 OR5M10Q6IEU7 315 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 MAMDC2Q7Z304 686 aaPredicted RBP12.94□□□□□ -0.34
C9orf3-202ENST00000297979 ATCAYQ86WG3 371 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 SIRT6Q8N6T7 355 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 CYB561A3Q8NBI2 242 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 FAM98AQ8NCA5 519 aaKnown RBP12.94□□□□□ -0.34
C9orf3-202ENST00000297979 OR11G2Q8NGC1 345 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 OR52E2Q8NGJ4 325 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 MOSPD2Q8NHP6 518 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 TMEM234Q8WY98 164 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 KISS1RQ969F8 398 aaPredicted RBP12.94□□□□□ -0.34
C9orf3-202ENST00000297979 SPACA9Q96E40 222 aaPredicted RBP12.94□□□□□ -0.34
C9orf3-202ENST00000297979 JAM3Q9BX67 310 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 OR51E2Q9H255 320 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 OR51V1Q9H2C8 321 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 SDHAF3Q9NRP4 125 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 ZNF229Q9UJW7 825 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 TMED7Q9Y3B3 224 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 ADAM18Q9Y3Q7 739 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 PCDHGA3Q9Y5H0 932 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 TRAV36DV7A0A075B6V5 113 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 ZC3H12DA2A288 527 aaKnown RBP12.94□□□□□ -0.34
C9orf3-202ENST00000297979 C2orf72A6NCS6 295 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 CCDC182A6NF36 153 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 BLOC1S5-TXNDC5H3BN57 136 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 ARPC3O15145 178 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 SUSD5O60279 629 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 MT-CO3P00414 261 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 CELA2AP08217 269 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 SLC2A5P22732 501 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 RPS5P46782 204 aaKnown RBP12.94□□□□□ -0.34
C9orf3-202ENST00000297979 RPS7P62081 194 aaKnown RBP12.94□□□□□ -0.34
C9orf3-202ENST00000297979 LTBQ06643 244 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 OR2G6Q5TZ20 316 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 ZNF704Q6ZNC4 412 aaPredicted RBP12.94□□□□□ -0.34
C9orf3-202ENST00000297979 SDR9C7Q8NEX9 313 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 OR10G3Q8NGC4 313 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 OR51G2Q8NGK0 314 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 OR4K13Q8NH42 304 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 TAAR8Q969N4 342 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 ZHX1-C8orf76Q96EF9 292 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 KATNB1Q9BVA0 655 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 FKRPQ9H9S5 495 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 PCDHGA1Q9Y5H4 931 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 NSG1A0A0A6YYJ2 146 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 A0A1W2PQ72 361 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 IDH3BO43837 385 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 DKK1O94907 266 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 PTGS2P35354 604 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 AQP2P41181 271 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 HTR3AP46098 478 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 SLC16A1P53985 500 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.94□□□□□ -0.34
C9orf3-202ENST00000297979 BICRALQ6AI39 1079 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 B3GLCTQ6Y288 498 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 TIPARPQ7Z3E1 657 aaKnown RBP12.94□□□□□ -0.34
C9orf3-202ENST00000297979 TBC1D15Q8TC07 691 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 CT55Q8WUE5 264 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 ST8SIA1Q92185 356 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 CMTM3Q96MX0 182 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 SECISBP2Q96T21 854 aaKnown RBP12.94□□□□□ -0.34
C9orf3-202ENST00000297979 METTL7AQ9H8H3 244 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 KLHL1Q9NR64 748 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 PPP4R1LQ9P1A2 415 aa12.94□□□□□ -0.34
C9orf3-202ENST00000297979 CRNNQ9UBG3 495 aaPredicted RBP12.94□□□□□ -0.34
C9orf3-202ENST00000297979 A0A0C4DFX4 3053 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 CCDC187A0A096LP49 1063 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 LOC100506127A0A0U1RQW1 187 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 TMEM72A0PK05 275 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 C9orf172C9J069 976 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 ITGA10O75578 1167 aa12.93□□□□□ -0.34
C9orf3-202ENST00000297979 CLPXO76031 633 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms