RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 A0A096LPI6 279 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 IGHV1-18A0A0C4DH31 117 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 SLCO1B7G3V0H7 640 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 SNNO75324 88 aaPredicted RBP11.14□□□□□ -0.63
CD44-203ENST00000278386 VAMP5O95183 116 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 FAM157CP0CG43 387 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 PRG2P13727 222 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 ACAA2P42765 397 aaKnown RBP11.14□□□□□ -0.63
CD44-203ENST00000278386 PDLIM4P50479 330 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 MVDP53602 400 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 TUBA1BP68363 451 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 TUBA4AP68366 448 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 LGALS3BPQ08380 585 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 GGTLC2Q14390 218 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 MAPK11Q15759 364 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 SLC9B1Q4ZJI4 515 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 TNFAIP8L3Q5GJ75 292 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 ZNF311Q5JNZ3 666 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 C1QTNF12Q5T7M4 302 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 VHLLQ6RSH7 139 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 TUBA1AQ71U36 451 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 SERPINA11Q86U17 422 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 PHC2Q8IXK0 858 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 CLIP4Q8N3C7 705 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 SLC38A5Q8WUX1 472 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 C3orf49Q96BT1 292 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 SLC25A36Q96CQ1 311 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 ITCHQ96J02 903 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 VRK1Q99986 396 aaPredicted RBP11.14□□□□□ -0.63
CD44-203ENST00000278386 PIMREGQ9BSJ6 248 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 SPATA9Q9BWV2 254 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 BEX2Q9BXY8 128 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 PIF1Q9H611 641 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 OBP2BQ9NPH6 170 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 ZIM2Q9NZV7 527 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 RPS6KB2Q9UBS0 482 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 ZNF232Q9UNY5 417 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 RASD1Q9Y272 281 aa11.14□□□□□ -0.63
CD44-203ENST00000278386 FBN3Q75N90 2809 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 OR6C65A6NJZ3 312 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 TMEM229AB2RXF0 380 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 UBDO15205 165 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 CRYAAP02489 173 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 TFPTP0C1Z6 253 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 IGHV4-31P0DP07 118 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 USF1P22415 310 aaPredicted RBP11.13□□□□□ -0.63
CD44-203ENST00000278386 RPS5P46782 204 aaKnown RBP11.13□□□□□ -0.63
CD44-203ENST00000278386 P2RY4P51582 365 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 POLR2JP52435 117 aaKnown RBP11.13□□□□□ -0.63
CD44-203ENST00000278386 WDR4P57081 412 aaKnown RBP11.13□□□□□ -0.63
CD44-203ENST00000278386 IL1RL1Q01638 556 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 ZSWIM7Q19AV6 140 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 CYB5R2Q6BCY4 276 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 MSANTD1Q6ZTZ1 278 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 CREB3L2Q70SY1 520 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 OR9I1Q8NGQ6 314 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 STK35Q8TDR2 534 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 NANOS1Q8WY41 292 aaKnown RBP11.13□□□□□ -0.63
CD44-203ENST00000278386 TMEM158Q8WZ71 300 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 PROX1Q92786 737 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 VPS33AQ96AX1 596 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 SORCS2Q96PQ0 1159 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 KATNB1Q9BVA0 655 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 CHODLQ9H9P2 273 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 THUMPD1Q9NXG2 353 aaKnown RBP11.13□□□□□ -0.63
CD44-203ENST00000278386 NKIRAS1Q9NYS0 192 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 LPAR3Q9UBY5 353 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 IFT52Q9Y366 437 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 MXRA5Q9NR99 2828 aa11.13□□□□□ -0.63
CD44-203ENST00000278386 A0A096LPE4 126 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 A0A0G2JPF8 293 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 A0A1W2PPZ6 126 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 HNRNPCL2B2RXH8 293 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 HNRNPCL3B7ZW38 293 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 C5orf58C9J3I9 102 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 NR5A2O00482 541 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 PHF1O43189 567 aaPredicted RBP11.12□□□□□ -0.63
CD44-203ENST00000278386 HNRNPCL1O60812 293 aaKnown RBP11.12□□□□□ -0.63
CD44-203ENST00000278386 UPK3AO75631 287 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 F12P00748 615 aaPredicted RBP11.12□□□□□ -0.63
CD44-203ENST00000278386 ZCCHC18P0CG32 403 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 HNRNPCL4P0DMR1 293 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 PNMTP11086 282 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 ZNF43P17038 809 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 SH3BGRP55822 239 aaPredicted RBP11.12□□□□□ -0.63
CD44-203ENST00000278386 CLDN17P56750 224 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 LSM11P83369 360 aaKnown RBP eCLIP11.12□□□□□ -0.63
CD44-203ENST00000278386 HOXC5Q00444 222 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 ROR2Q01974 943 aaKnown RBP11.12□□□□□ -0.63
CD44-203ENST00000278386 MIER2Q8N344 545 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 ANKS4BQ8N8V4 417 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 BBS10Q8TAM1 723 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 MAELQ96JY0 434 aaKnown RBP11.12□□□□□ -0.63
CD44-203ENST00000278386 OR52B2Q96RD2 323 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 SHARPINQ9H0F6 387 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 RAD21L1Q9H4I0 556 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 CA10Q9NS85 328 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 PRDM4Q9UKN5 801 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 RAB21Q9UL25 225 aa11.12□□□□□ -0.63
CD44-203ENST00000278386 KCNS2Q9ULS6 477 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms