RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 TACR1P25103 407 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 SSTR4P31391 388 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 PIN1Q13526 163 aaPredicted RBP13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 CLINT1Q14677 625 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 RAB6CQ53S08 254 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 GRASPQ7Z6J2 395 aaPredicted RBP13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 OR10J5Q8NHC4 309 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 EGLN1Q9GZT9 426 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 IL25Q9H293 177 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC9B1P1A6NJY1 282 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 HSPB6O14558 160 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 SPI1P17947 270 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 NME2P22392 152 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 IDUAP35475 653 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 PBX1P40424 430 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 EPHA5P54756 1037 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 ZNF90Q03938 601 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 TIMD4Q96H15 378 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 WNT6Q9Y6F9 365 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 PPRC1Q5VV67 1664 aaKnown RBP13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 TNS2Q63HR2 1409 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 NXPH2O95156 264 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 HTR5AP47898 357 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 NLRC3Q7RTR2 1065 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC38A6Q8IZM9 456 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 C20orf85Q9H1P6 137 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 MRPL33O75394 65 aaKnown RBP13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 ADIPOR2Q86V24 386 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 VAMP8Q9BV40 100 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 VN1R3Q9BXE9 311 aa13.03□□□□□ -0.32
CCDC88A-201ENST00000263630 IL4RP24394 825 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 WNT7BP56706 349 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 RAB1AP62820 205 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 MLLT11Q13015 90 aaPredicted RBP13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 CEBPEQ15744 281 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 FCRLBQ6BAA4 426 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 KCNG3Q8TAE7 436 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 GABRR3A8MPY1 467 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 ETV3P41162 512 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC11A1P49279 550 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 TPMTP51580 245 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 TECRLQ5HYJ1 363 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 KDM4DQ6B0I6 523 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 VHLLQ6RSH7 139 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 SLC16A14Q7RTX9 510 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 RANBP9Q96S59 729 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 RAB6CQ9H0N0 254 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 PELI2Q9HAT8 420 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 C17orf105B2RV13 164 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 LEFTY2O00292 366 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 HSD17B1P14061 328 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 GDF1P27539 372 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 CD1CP29017 333 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 RAB33AQ14088 237 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 VASNQ6EMK4 673 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 C5orf46Q6UWT4 87 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 ALKAL2Q6UX46 152 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 GRAMD2AQ8IUY3 354 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 ASB11Q8WXH4 323 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 IKZF5Q9H5V7 419 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 ZDHHC18Q9NUE0 388 aa13.02□□□□□ -0.32
CCDC88A-201ENST00000263630 FAM24AA6NFZ4 105 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 S1PR4O95977 384 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 C5AR1P21730 350 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 ZNF154Q13106 437 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 CD99L2Q8TCZ2 262 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 ZNF597Q96LX8 424 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 F2RL3Q96RI0 385 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 ZNF395Q9H8N7 513 aaPredicted RBP13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 MEPCEQ7L2J0 689 aaKnown RBP13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 ULBP2Q9BZM5 246 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 MAGI3Q5TCQ9 1506 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 SLC16A7O60669 478 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 FBXO45P0C2W1 286 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 COL13A1Q5TAT6 717 aaPredicted RBP13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 GDPD3Q7L5L3 318 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 NKAIN3Q8N8D7 197 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 OR51L1Q8NGJ5 315 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 SLC25A21Q9BQT8 299 aaPredicted RBP13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 DUSP23Q9BVJ7 150 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 TCRBV7S3A2A0A539 114 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 TECPR2O15040 1411 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 PRAMEF4O60810 478 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 ITGAMP11215 1152 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 CCKARP32238 428 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 ADAM5Q6NVV9 412 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 CDC20BQ86Y33 519 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 CDH26Q8IXH8 852 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 APH1BQ8WW43 257 aa13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 H1FXQ92522 213 aaKnown RBP13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 NKX6-2Q9C056 277 aaPredicted RBP13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 NMNAT1Q9HAN9 279 aaPredicted RBP13.02□□□□□ -0.33
CCDC88A-201ENST00000263630 RNASET2O00584 256 aaKnown RBP13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 PTAFRP25105 342 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 DUSP1P28562 367 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 RFX2P48378 723 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 SULT1A2P50226 295 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 OR8G2PQ6IF36 304 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 FAM57BQ71RH2 274 aa13.01□□□□□ -0.33
CCDC88A-201ENST00000263630 LRRTM1Q86UE6 522 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms