RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 LGALSLQ3ZCW2 172 aaPredicted RBP11.62□□□□□ -0.55
LIG1-201ENST00000263274 LEG1Q6P5S2 330 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 DGAT2L6Q6ZPD8 337 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 USP53Q70EK8 1073 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 OOSP2Q86WS3 158 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 ZBTB44Q8NCP5 570 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 SYNPRQ8TBG9 265 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 SPACA7Q96KW9 195 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.62□□□□□ -0.55
LIG1-201ENST00000263274 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.62□□□□□ -0.55
LIG1-201ENST00000263274 KIR3DX1Q9H7L2 352 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 B3GNT2Q9NY97 397 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 ZNF879B4DU55 563 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 GPR89AB7ZAQ6 455 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 HRKO00198 91 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 SIX6O95475 246 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 NGFRP08138 427 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 GPR89BP0CG08 455 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 SRMP19623 302 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 PSMA6P60900 246 aaKnown RBP11.62□□□□□ -0.55
LIG1-201ENST00000263274 UBE2MP61081 183 aaKnown RBP11.62□□□□□ -0.55
LIG1-201ENST00000263274 TFF2Q03403 129 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 GSG1Q2KHT4 349 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 CD276Q5ZPR3 534 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 TMPRSS12Q86WS5 348 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 SLITRK4Q8IW52 837 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 ZPLD1Q8TCW7 415 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 ZNRF4Q8WWF5 429 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 SGTBQ96EQ0 304 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 ELMOD3Q96FG2 381 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 LIN7BQ9HAP6 207 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 EMC7Q9NPA0 242 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 UBQLN2Q9UHD9 624 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 COPS3Q9UNS2 423 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 NPFFR2Q9Y5X5 522 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 A0A0A6YYC8 382 aaPredicted RBP11.62□□□□□ -0.55
LIG1-201ENST00000263274 TMEM72A0PK05 275 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 I3L1I5 382 aaPredicted RBP11.62□□□□□ -0.55
LIG1-201ENST00000263274 CFDP00746 253 aaPredicted RBP11.62□□□□□ -0.55
LIG1-201ENST00000263274 CDK5R1Q15078 307 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 DMKNQ6E0U4 476 aaPredicted RBP11.62□□□□□ -0.55
LIG1-201ENST00000263274 ARMC6Q6NXE6 501 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 KIRREL2Q6UWL6 708 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 Q6ZTK2 550 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 TMPRSS11FQ6ZWK6 438 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 OR2T4Q8NH00 348 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 OR8S1Q8NH09 359 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 THEM6Q8WUY1 208 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 HERVK_113Q902F9 699 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 Q96M85 177 aa11.62□□□□□ -0.55
LIG1-201ENST00000263274 RGS11O94810 467 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 NUDT14O95848 222 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 RAD52P43351 418 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 ADPRHP54922 357 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 RIN1Q13671 783 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 ENPP2Q13822 863 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 KCNAB1Q14722 419 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 CFAP77Q6ZQR2 320 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 JAZF1Q86VZ6 243 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 OR56B4Q8NH76 319 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 FCAMRQ8WWV6 532 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 SMIM19Q96E16 107 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 S100A16Q96FQ6 103 aaKnown RBP11.61□□□□□ -0.55
LIG1-201ENST00000263274 UBL7Q96S82 380 aaPredicted RBP11.61□□□□□ -0.55
LIG1-201ENST00000263274 ULBP3Q9BZM4 244 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 SLITRK2Q9H156 845 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 INPP5EQ9NRR6 644 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 SLCO1C1Q9NYB5 712 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 ABRACLQ9P1F3 81 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 NCDNQ9UBB6 729 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 TRIM77I1YAP6 450 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 J3QRE1 110 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 L7N2F9 121 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 KRT33AO76009 404 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 CTSBP07858 339 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 UCHL1P09936 223 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 TSFMP43897 325 aaKnown RBP11.61□□□□□ -0.55
LIG1-201ENST00000263274 FAM53BQ14153 422 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 GRK1Q15835 563 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 SLC22A10Q63ZE4 541 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 FAM220AQ7Z4H9 259 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 LIX1LQ8IVB5 337 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 COQ8AQ8NI60 647 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 NOX3Q9HBY0 568 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 LRIT1Q9P2V4 623 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 ING1Q9UK53 422 aaPredicted RBP11.61□□□□□ -0.55
LIG1-201ENST00000263274 CAMK2AQ9UQM7 478 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 FXYD6-FXYD2A0A087WZ82 144 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 ANXA2P2A6NMY6 339 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 ANXA2P07355 339 aaKnown RBP11.61□□□□□ -0.55
LIG1-201ENST00000263274 PSMB1P20618 241 aaKnown RBP11.61□□□□□ -0.55
LIG1-201ENST00000263274 DCTDP32321 178 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 AQP2P41181 271 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 ILF3Q12906 894 aaKnown RBP eCLIP11.61□□□□□ -0.55
LIG1-201ENST00000263274 TCTE1Q5JU00 501 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 CLVS2Q5SYC1 327 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 YOD1Q5VVQ6 348 aaPredicted RBP11.61□□□□□ -0.55
LIG1-201ENST00000263274 BTN2A1Q7KYR7 527 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 TAF8Q7Z7C8 310 aa11.61□□□□□ -0.55
LIG1-201ENST00000263274 ZNF676Q8N7Q3 588 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms