RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ZNF587BE7ETH6 402 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 DDAH2O95865 285 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 MT-ATP6P00846 226 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 RAB4BP61018 213 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 OR2G6Q5TZ20 316 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 LYRM4Q9HD34 91 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 ARPC1BO15143 372 aaKnown RBP17.77■□□□□ 0.44
UPF1-201ENST00000262803 EIF4E2O60573 245 aaKnown RBP17.77■□□□□ 0.44
UPF1-201ENST00000262803 CTNSO60931 367 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 KLKB1P03952 638 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 OR2T7P0C7T2 308 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 UBBP0CG47 229 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 UBCP0CG48 685 aaKnown RBP17.77■□□□□ 0.44
UPF1-201ENST00000262803 HENMT1Q5T8I9 393 aaKnown RBP17.77■□□□□ 0.44
UPF1-201ENST00000262803 SMIM15Q7Z3B0 74 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 NLRP8Q86W28 1048 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 OR2T27Q8NH04 317 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 WASH6PQ9NQA3 447 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 CEBPZOSA8MTT3 80 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 KCNK2O95069 426 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 GASTP01350 101 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 RPS5P46782 204 aaKnown RBP17.77■□□□□ 0.44
UPF1-201ENST00000262803 NHSL2Q5HYW2 709 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 COMMD7Q86VX2 200 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 ARRDC3Q96B67 414 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 OCSTAMPQ9BR26 566 aa17.77■□□□□ 0.44
UPF1-201ENST00000262803 HIDE1A8MVS5 230 aa17.77■□□□□ 0.43
UPF1-201ENST00000262803 HOXC11O43248 304 aaPredicted RBP17.77■□□□□ 0.43
UPF1-201ENST00000262803 TIMM8AO60220 97 aaPredicted RBP17.77■□□□□ 0.43
UPF1-201ENST00000262803 PVRP15151 417 aa17.77■□□□□ 0.43
UPF1-201ENST00000262803 SEC61A1P61619 476 aaKnown RBP17.77■□□□□ 0.43
UPF1-201ENST00000262803 HTD2P86397 168 aa17.77■□□□□ 0.43
UPF1-201ENST00000262803 MGAT3Q09327 533 aa17.77■□□□□ 0.43
UPF1-201ENST00000262803 NPRL2Q8WTW4 380 aa17.77■□□□□ 0.43
UPF1-201ENST00000262803 PIGCQ92535 297 aa17.77■□□□□ 0.43
UPF1-201ENST00000262803 DLX5P56178 289 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 PEA15Q15121 130 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 MBOAT2Q6ZWT7 520 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 A4GALTQ9NPC4 353 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 ATG4BQ9Y4P1 393 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 TMEM221A6NGB7 291 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 ZNF136P52737 540 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 MRPL2Q5T653 305 aaKnown RBP17.76■□□□□ 0.43
UPF1-201ENST00000262803 ELP2Q6IA86 826 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 DPY19L4Q7Z388 723 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 PTRH1Q86Y79 214 aaKnown RBP17.76■□□□□ 0.43
UPF1-201ENST00000262803 OR13F1Q8NGS4 319 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 LIN7BQ9HAP6 207 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 CHRNEQ04844 493 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 ZP2Q05996 745 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 TMEM176BQ3YBM2 270 aaPredicted RBP17.76■□□□□ 0.43
UPF1-201ENST00000262803 SLC35D3Q5M8T2 416 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 VASNQ6EMK4 673 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 SLC38A5Q8WUX1 472 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 CBX7O95931 251 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 GLULP15104 373 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 TACR3P29371 465 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 ALDH3B1P43353 468 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 ZMAT1Q5H9K5 638 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 WDR5BQ86VZ2 330 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 KCNG3Q8TAE7 436 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 MIB2Q96AX9 1013 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 TXN2Q99757 166 aa17.76■□□□□ 0.43
UPF1-201ENST00000262803 KITLGP21583 273 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 SLCO4C1Q6ZQN7 724 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 C12orf45Q8N5I9 185 aaPredicted RBP17.75■□□□□ 0.43
UPF1-201ENST00000262803 SIMC1Q8NDZ2 872 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 SLC22A12Q96S37 553 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 SSX3Q99909 188 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 CD300AQ9UGN4 299 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 NWD2Q9ULI1 1742 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 TMEFF1Q8IYR6 380 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 OR4M1Q8NGD0 313 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 ZBTB8AQ96BR9 441 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 DAZAP1Q96EP5 407 aaKnown RBP17.75■□□□□ 0.43
UPF1-201ENST00000262803 OR6C1Q96RD1 312 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 STACQ99469 402 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 MS4A8Q9BY19 250 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 A0A1B0GX78 115 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 RFPL3O75679 317 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 ABLIM3O94929 683 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 DPP4P27487 766 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 CD79BP40259 229 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 MFGE8Q08431 387 aaPredicted RBP17.75■□□□□ 0.43
UPF1-201ENST00000262803 C14orf28Q4W4Y0 310 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 ZNF529Q6P280 563 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 DPY19L2P2Q6ZN68 376 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 UHRF2Q96PU4 802 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 ZPBPQ9BS86 351 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 FABP1P07148 127 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 GRB2P62993 217 aaKnown RBP17.75■□□□□ 0.43
UPF1-201ENST00000262803 CYP4V2Q6ZWL3 525 aaPredicted RBP17.75■□□□□ 0.43
UPF1-201ENST00000262803 NMNAT2Q9BZQ4 307 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 ZDHHC5Q9C0B5 715 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 SLCO5A1Q9H2Y9 848 aa17.75■□□□□ 0.43
UPF1-201ENST00000262803 ARHGAP33O14559 1287 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 MAOBP27338 520 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 CARD18P57730 90 aa17.74■□□□□ 0.43
UPF1-201ENST00000262803 GPR19Q15760 415 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms