RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PUDPQ08623 228 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 SELENBP1Q13228 472 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 BORAQ6PGQ7 559 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 OR10G3Q8NGC4 313 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF417Q8TAU3 575 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 ENKURQ8TC29 256 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 HAVCR2Q8TDQ0 301 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 C3orf49Q96BT1 292 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF587Q96SQ5 575 aaPredicted RBP10.58□□□□□ -0.72
VPS4A-201ENST00000254950 WDR77Q9BQA1 342 aaPredicted RBP10.58□□□□□ -0.72
VPS4A-201ENST00000254950 RBM24Q9BX46 236 aaKnown RBP10.58□□□□□ -0.72
VPS4A-201ENST00000254950 OR11A1Q9GZK7 315 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 ABCB9Q9NP78 766 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 PLCXD1Q9NUJ7 323 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 CLEC4AQ9UMR7 237 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 MOKQ9UQ07 419 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 DTX4Q9Y2E6 619 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 WIF1Q9Y5W5 379 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 GVINP1Q7Z2Y8 2422 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 CACNA1CQ13936 2221 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 A0A1B0GVI7 797 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 ANKUB1A6NFN9 424 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 CLPXO76031 633 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 MAP2K6P52564 334 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 NUBP1P53384 320 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 SLC35A2P78381 396 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 IGLV3-21P80748 117 aaPredicted RBP10.58□□□□□ -0.72
VPS4A-201ENST00000254950 HSF2Q03933 536 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 GLYR1Q49A26 553 aaPredicted RBP10.58□□□□□ -0.72
VPS4A-201ENST00000254950 GDPGP1Q6ZNW5 385 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 CLDN22Q8N7P3 220 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 OR4D11Q8NGI4 311 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 OR8K3Q8NH51 312 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF721Q8TF20 911 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 CTHRC1Q96CG8 243 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 GALNT9Q9HCQ5 603 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 FANCFQ9NPI8 374 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 CMC2Q9NRP2 79 aa10.58□□□□□ -0.72
VPS4A-201ENST00000254950 KLF13Q9Y2Y9 288 aaPredicted RBP10.58□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF701M0R085 212 aaPredicted RBP10.57□□□□□ -0.72
VPS4A-201ENST00000254950 SOX2P48431 317 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 CSRP2Q16527 193 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 AGAP7PQ5VUJ5 663 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 LRFN4Q6PJG9 635 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 TMPRSS11FQ6ZWK6 438 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 BCDIN3DQ7Z5W3 292 aaKnown RBP10.57□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF615Q8N8J6 731 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 POC5Q8NA72 575 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF285Q96NJ3 590 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 AGAP4Q96P64 663 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 ALG12Q9BV10 488 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 EXOSC3Q9NQT5 275 aaKnown RBP10.57□□□□□ -0.72
VPS4A-201ENST00000254950 GCM2O75603 506 aaPredicted RBP10.57□□□□□ -0.72
VPS4A-201ENST00000254950 PLP2Q04941 152 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 TP53I3Q53FA7 332 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 B3GLCTQ6Y288 498 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 USP51Q70EK9 711 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 SLC35D2Q76EJ3 337 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 CEACAM19Q7Z692 300 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 C9orf40Q8IXQ3 194 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 ALDH16A1Q8IZ83 802 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 SPRYD4Q8WW59 207 aaPredicted RBP10.57□□□□□ -0.72
VPS4A-201ENST00000254950 LMF1Q96S06 567 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 COQ7Q99807 217 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 TMEM43Q9BTV4 400 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 DUSP21Q9H596 190 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 HINT3Q9NQE9 182 aaKnown RBP10.57□□□□□ -0.72
VPS4A-201ENST00000254950 DIMT1Q9UNQ2 313 aaKnown RBP10.57□□□□□ -0.72
VPS4A-201ENST00000254950 A0A087WZY1 265 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 A0A1W2PQ72 361 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 LRRN3E7EW58 273 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 PSMD7P51665 324 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 FOXL2P58012 376 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 NCS1P62166 190 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 AIMP2Q13155 320 aaKnown RBP10.57□□□□□ -0.72
VPS4A-201ENST00000254950 RSBN1Q5VWQ0 802 aaPredicted RBP10.57□□□□□ -0.72
VPS4A-201ENST00000254950 C22orf42Q6IC83 251 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 CBLN3Q6UW01 205 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 M1APQ8TC57 530 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 FNDC8Q8TC99 324 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 STK35Q8TDR2 534 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 MUL1Q969V5 352 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 RASD2Q96D21 266 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 HDHD5Q9BXW7 423 aa10.57□□□□□ -0.72
VPS4A-201ENST00000254950 H7C1C5 153 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 FFAR1O14842 300 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 LCN6P62502 163 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 ACER2Q5QJU3 275 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF574Q6ZN55 896 aaPredicted RBP10.56□□□□□ -0.72
VPS4A-201ENST00000254950 RASL10BQ96S79 203 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 SYT4Q9H2B2 425 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 IL20Q9NYY1 176 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 CAB39Q9Y376 341 aaPredicted RBP10.56□□□□□ -0.72
VPS4A-201ENST00000254950 PLXNA2O75051 1894 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 SCN2AQ99250 2005 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 MAN2A2P49641 1150 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 RGS6P49758 472 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 FOXF1Q12946 379 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 NFATC3Q12968 1075 aa10.56□□□□□ -0.72
VPS4A-201ENST00000254950 MLLT11Q13015 90 aaPredicted RBP10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms