RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 IKZF1Q13422 519 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 COX20Q5RI15 118 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 TMEM240Q5SV17 173 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 COX15Q7KZN9 410 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 CD163Q86VB7 1156 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 L3MBTL4Q8NA19 623 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 ASB16Q96NS5 453 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 KATNB1Q9BVA0 655 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 SGPP1Q9BX95 441 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 LYRM4Q9HD34 91 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 BABAM2Q9NXR7 383 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 SLC22A7Q9Y694 548 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 H7C2Y5 167 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 DAPP51397 102 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 ACTBL2Q562R1 376 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 RTN4RL1Q86UN2 441 aaPredicted RBP8.08□□□□□ -1.12
PTCD3-201ENST00000254630 OR4N2Q8NGD1 307 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 OR5M1Q8NGP8 315 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 SSX3Q99909 188 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 CMSS1Q9BQ75 279 aaKnown RBP8.08□□□□□ -1.12
PTCD3-201ENST00000254630 OCSTAMPQ9BR26 566 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 C6orf106Q9H6K1 298 aaPredicted RBP8.08□□□□□ -1.12
PTCD3-201ENST00000254630 SLC23A2Q9UGH3 650 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 STEAP1Q9UHE8 339 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 TRAPPC2LQ9UL33 140 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 NME7Q9Y5B8 376 aa8.08□□□□□ -1.12
PTCD3-201ENST00000254630 SEC14L2O76054 403 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 TSPAN15O95858 294 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 IFNA4P05014 189 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 CHRNB4P30926 498 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 S100A7P31151 101 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 PRKAR1BP31321 381 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 GPLD1P80108 840 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 SLC48A1Q6P1K1 146 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 TBPL2Q6SJ96 375 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 CMIPQ8IY22 773 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 PLPP6Q8IY26 295 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 CHTF18Q8WVB6 975 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 TMIGD2Q96BF3 282 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 EGLN2Q96KS0 407 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 GLIPR2Q9H4G4 154 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 CXorf36Q9H7Y0 433 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 UNKLQ9H9P5 680 aaKnown RBP8.07□□□□□ -1.12
PTCD3-201ENST00000254630 PRMT8Q9NR22 394 aaPredicted RBP8.07□□□□□ -1.12
PTCD3-201ENST00000254630 SEMA4GQ9NTN9 838 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 STRCQ7RTU9 1775 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 CDK5RAP2Q96SN8 1893 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 A8MXE2 369 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 K7ESM1 405 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 LIPCP11150 499 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 CSNK1G2P78368 415 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 GDF7Q7Z4P5 450 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 DMBX1Q8NFW5 382 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 TFAP2CQ92754 450 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 ZNF775Q96BV0 537 aaPredicted RBP8.07□□□□□ -1.12
PTCD3-201ENST00000254630 BOD1Q96IK1 185 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 SLC29A1Q99808 456 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 PHF7Q9BWX1 381 aaPredicted RBP8.07□□□□□ -1.12
PTCD3-201ENST00000254630 IFNA17P01571 189 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 VEGFCP49767 419 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 SNRPD2P62316 118 aaKnown RBP8.07□□□□□ -1.12
PTCD3-201ENST00000254630 DPY19L2P2Q6ZN68 376 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 DEFB123Q8N688 67 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 ZNF740Q8NDX6 193 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 C17orf50Q8WW18 174 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 ITFG2Q969R8 447 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 OR14A2Q96R54 314 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 ELF4Q99607 663 aaPredicted RBP8.07□□□□□ -1.12
PTCD3-201ENST00000254630 UBE2ZQ9H832 354 aaPredicted RBP8.07□□□□□ -1.12
PTCD3-201ENST00000254630 P2RX6O15547 441 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 IL2RGP31785 369 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 EIF1P41567 113 aaKnown RBP8.07□□□□□ -1.12
PTCD3-201ENST00000254630 TSFMP43897 325 aaKnown RBP8.07□□□□□ -1.12
PTCD3-201ENST00000254630 LUMP51884 338 aaPredicted RBP8.07□□□□□ -1.12
PTCD3-201ENST00000254630 ZNF136P52737 540 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 KCNAB1Q14722 419 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 DUSP7Q16829 419 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 ESPNLQ6ZVH7 1005 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 LRRC28Q86X40 367 aaPredicted RBP8.07□□□□□ -1.12
PTCD3-201ENST00000254630 FRMD1Q8N878 549 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 ZNF454Q8N9F8 522 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 FKRPQ9H9S5 495 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 GALNT9Q9HCQ5 603 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 COL18A1P39060 1754 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 RPS25P62851 125 aaKnown RBP8.07□□□□□ -1.12
PTCD3-201ENST00000254630 YOD1Q5VVQ6 348 aaPredicted RBP8.07□□□□□ -1.12
PTCD3-201ENST00000254630 LSMEM2Q8N112 164 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 ABHD11Q8NFV4 315 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 ARL11Q969Q4 196 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 ZBTB8AQ96BR9 441 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 STACQ99469 402 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 NOX3Q9HBY0 568 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 ATP13A2Q9NQ11 1180 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 TMEM100Q9NV29 134 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 USP22Q9UPT9 525 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 TMEM265A0A087WTH1 108 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 A0A0U1RQK1 487 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 DOK2O60496 412 aa8.07□□□□□ -1.12
PTCD3-201ENST00000254630 EIF1BO60739 113 aaKnown RBP8.07□□□□□ -1.12
PTCD3-201ENST00000254630 OLFM2O95897 454 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms