RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 GRIP1Q9Y3R0 1128 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 SERPINA5P05154 406 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 PET100P0DJ07 73 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 BCKDHBP21953 392 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 RGS6P49758 472 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 SPEM2Q0P670 501 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 ACTBL2Q562R1 376 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 SLC35D2Q76EJ3 337 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 GJC3Q8NFK1 279 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 VRK1Q99986 396 aaPredicted RBP12.55□□□□□ -0.4
LDLR-201ENST00000252444 CHST8Q9H2A9 424 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 MBD1Q9UIS9 605 aaPredicted RBP12.55□□□□□ -0.4
LDLR-201ENST00000252444 NPIPA5A0A0B4J1W7 369 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 VGLL3A8MV65 326 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 NPIPA7E9PJI5 369 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 H7C1Q1 480 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 NGFRP08138 427 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 NUDT7P0C024 238 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 NPIPA8P0DM63 369 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 APEHP13798 732 aaKnown RBP12.55□□□□□ -0.4
LDLR-201ENST00000252444 MMP11P24347 488 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 TRMT12Q53H54 448 aaKnown RBP12.55□□□□□ -0.4
LDLR-201ENST00000252444 OR11L1Q8NGX0 322 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 RAB40AQ8WXH6 277 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 TMEM121BQ9BXQ6 578 aaPredicted RBP12.55□□□□□ -0.4
LDLR-201ENST00000252444 TRIM8Q9BZR9 551 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 KLHL13Q9P2N7 655 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 KLK4Q9Y5K2 254 aa12.55□□□□□ -0.4
LDLR-201ENST00000252444 TRBV4-1A0A0J9YWV2 114 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 SRYQ05066 204 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 KCNAB1Q14722 419 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 RNPS1Q15287 305 aaKnown RBP12.54□□□□□ -0.4
LDLR-201ENST00000252444 LRFN4Q6PJG9 635 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 ZNF782Q6ZMW2 699 aaPredicted RBP12.54□□□□□ -0.4
LDLR-201ENST00000252444 LANCL3Q6ZV70 420 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 FBXO27Q8NI29 283 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 APH1AQ96BI3 265 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 ZNF281Q9Y2X9 895 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 MXD1Q05195 221 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 TOMM34Q15785 309 aaPredicted RBP12.54□□□□□ -0.4
LDLR-201ENST00000252444 SLC16A14Q7RTX9 510 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 RFT1Q96AA3 541 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 CNRIP1Q96F85 164 aaPredicted RBP12.54□□□□□ -0.4
LDLR-201ENST00000252444 LAPTM4AQ15012 233 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 TMEM151AQ8N4L1 468 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 FAM26EQ8N5C1 309 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 BORCS8Q96FH0 119 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 GINS4Q9BRT9 223 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 LRFN1Q9P244 771 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 ENPP5Q9UJA9 477 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 TCRBV5S2A0A599 114 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 PRAMEF27A3QJZ7 478 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 ZNF878C9JN71 531 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 SLC16A7O60669 478 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 DIRAS3O95661 229 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 GABRA5P31644 462 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 KIR2DL3P43628 341 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 FOXK2Q01167 660 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 RSU1Q15404 277 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 PRICKLE4Q2TBC4 344 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 MARCH3Q86UD3 253 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 ZNF584Q8IVC4 421 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 UTP4Q969X6 686 aaKnown RBP12.54□□□□□ -0.4
LDLR-201ENST00000252444 TMEM41AQ96HV5 264 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 TCEAL2Q9H3H9 227 aaPredicted RBP12.54□□□□□ -0.4
LDLR-201ENST00000252444 ASB1Q9Y576 335 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 A3GALT2U3KPV4 340 aa12.54□□□□□ -0.4
LDLR-201ENST00000252444 PRAMEF33A0A0G2JMD5 474 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 A6NL46 340 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 PRAMEF10O60809 474 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 RBBP9O75884 186 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 JUNBP17275 347 aaPredicted RBP12.53□□□□□ -0.4
LDLR-201ENST00000252444 TFF2Q03403 129 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 YIF1BQ5BJH7 314 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 SLC25A25Q6KCM7 469 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 ANKRD13BQ86YJ7 626 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 SETD6Q8TBK2 473 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 LGALS12Q96DT0 336 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 SORCS2Q96PQ0 1159 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 PSORS1C1Q9UIG5 152 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 POU2F3Q9UKI9 436 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 FGF5P12034 268 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 CD40LGP29965 261 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 SDHAP31040 664 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 C1orf94Q6P1W5 598 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 VN1R4Q7Z5H5 301 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 GHDCQ8N2G8 530 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 UXS1Q8NBZ7 420 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 TNFAIP8L1Q8WVP5 186 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 NECAB3Q96P71 396 aaPredicted RBP12.53□□□□□ -0.4
LDLR-201ENST00000252444 BCL2L14Q9BZR8 327 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 SEMA4CQ9C0C4 833 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 PLEK2Q9NYT0 353 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 ZNF391Q9UJN7 358 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 ETV7Q9Y603 341 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 KIAA0100Q14667 2235 aaKnown RBP12.53□□□□□ -0.4
LDLR-201ENST00000252444 ALG1L2C9J202 215 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 SOD1P00441 154 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 PTPN6P29350 595 aa12.53□□□□□ -0.4
LDLR-201ENST00000252444 HNRNPA0Q13151 305 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 190 ms